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BaseInfo

ncRNA ID novel_zma_miR13319
Species Zea mays
Class miRNA
Genome position Chr4:25022481-25022602 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 99 - ACCUUGCUGUGGGUGGCCUGGACC - 122
Stem-loop(if miRNA) ---A     C GU G              ACUCA   --G       AC   AU     -    CC
    CCUUG U  G GUGGCCUGGACCUC     GAG   GGUCCGG  CUC  CCAAG GAGU  G
    ||||| |  | ||||||||||||||     |||   |||||||  |||  ||||| ||||  G
    GGGAC A  U UAUCGGGCCUGGAG     CUC   CCGGGCC  GAG  GGUUC CUCG  C
CCUA     - UG G              ----G   AUG       CU   --     A    UU
Stem-loop sequence ACCUUGCUGUGGGUGGCCUGGACCUCACUCAGAGGGGUCCGGACCUCAUCCAAGGAGUCCGGCUUGCUCACUUGGGAGUCCCGGGCCGUACUCGGAGGUCCGGGCUAUGUGUACAGGGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU967963.1
ncRNA:24   CCAGGUCCGGUGGGUGUCGUUCCA   1
  ||---||||||||||||*||||||
targets:251   GG---AGGCCACCCACACCAAGGU   271

1.5 Zea mays clone 311986 RNA-binding region-containing protein 1 mRNA, complete cds NA coding protein psRNATarget
NM_001157232.1
ncRNA:24   CCAGGUCCGGUGGGUGUCGUUCCA   1
  ||---||||||||||||*||||||
targets:251   GG---AGGCCACCCACACCAAGGU   271

1.5 Zea mays uncharacterized LOC100284337 (pco116717), mRNA NA coding protein psRNATarget