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BaseInfo

ncRNA ID	novel_zma_miR13317
Species	Zea mays
Class	miRNA
Genome position	Chr3:227750181-227750224 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	22
Mature sequence(if miRNA)	23 - CGAGCCAGCUCGAACUCGGACA - 44
Stem-loop(if miRNA)	--            AAC    A   CGAGCCAGCUCG   UCGG C   ||||||||||||   |||| A   GCUCGGUCGAGC   AGCC A UU            -CA    G
Stem-loop sequence	CGAGCCAGCUCGAACUCGGACAAGCCGAACCGAGCUGGCUCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549497.1	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   |||||||||||||||||||||| targets:3934   UGUCCGAGUUCGAGCUGGCUCG   3955 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008673964.2	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   |||||||||||||||||||||| targets:3931   UGUCCGAGUUCGAGCUGGCUCG   3952 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549495.1	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   |||||||||||||||||||||| targets:3932   UGUCCGAGUUCGAGCUGGCUCG   3953 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663462.2	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   *|*|||||||=||||||||||| targets:1704   CGACCGAGUUUGAGCUGGCUCG   1725 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100274870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU950141.1	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   *|*|||||*||||||||||||| targets:223   CGACCGAGCUCGAGCUGGCUCG   244 Target Full Sequence	1.0	Zea mays clone 462989 mRNA sequence	NA	coding protein	psRNATarget
EU948448.1	ncRNA:22   ACAGGCUCAAGCUCGACCGAGC   1   **||||||*||||||*|||||| targets:319   GCUCCGAGCUCGAGCCGGCUCG   340 Target Full Sequence	2.5	Zea mays clone 376771 mRNA sequence	NA	coding protein	psRNATarget