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BaseInfo

ncRNA ID	novel_zma_miR13316
Species	Zea mays
Class	miRNA
Genome position	Chr5:221364798-221364898 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	20
Mature sequence(if miRNA)	1 - GAUCCUUAAAUAAUGUUAAA - 20
Stem-loop(if miRNA)	--      GUUUG     G   -U   GAAUG    CU       -UUUC  GU   UGGCGU     GAGGA CCA  GCU     GGCC  GAAUAUU     CU  U   ||||||     ||||| |||  |||     ||||  |||||||     ||   AUUGUA     UUCCU GGU  CGG     UCGG  CUUAUAA     GA  U AA      AUAAA     A   UU   -----    UU       UUGAU  AG
Stem-loop sequence	UGGCGUGUUUGGAGGAGCCAUGCUGAAUGGGCCCUGAAUAUUUUUCCUGUUUGAAGUAGUUAAUAUUCUUGGCUGGCUUUGGAUCCUUAAAUAAUGUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068290.2	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   |||||||||||||||||||| targets:458   UUUAACAUUAUUUAAGGAUC   477 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0103P23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157847.1	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   *|||=|||||||||||*||| targets:821   GUUAGCAUUAUUUAAGAAUC   840 Target Full Sequence	2.5	Zea mays calcineurin B-like protein 9 (LOC100284952), mRNA	NA	coding protein	psRNATarget
EU970252.1	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   *|||=|||||||||||*||| targets:821   GUUAGCAUUAUUUAAGAAUC   840 Target Full Sequence	2.5	Zea mays clone 342715 calcineurin B-like protein 9 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660474.2	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   *|||=|||||||||||*||| targets:812   GUUAGCAUUAUUUAAGAAUC   831 Target Full Sequence	2.5	PREDICTED: Zea mays calcineurin B-like protein 9 (LOC100284952), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660475.2	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   *|||=|||||||||||*||| targets:816   GUUAGCAUUAUUUAAGAAUC   835 Target Full Sequence	2.5	PREDICTED: Zea mays calcineurin B-like protein 9 (LOC100284952), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU960527.1	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   *|||=|||||||||||*||| targets:420   GUUAGCAUUAUUUAAGAAUC   439 Target Full Sequence	2.5	Zea mays clone 225859 calcineurin B-like protein 9 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679175.2	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   ||||*||||||||*|||||| targets:2220   UUUACCAUUAUUUUAGGAUC   2239 Target Full Sequence	2.5	PREDICTED: Zea mays DNA cytosine methyltransferase Zmet 3 (LOC100192479), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034466.1	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   ||||*||||||||*|||||| targets:2038   UUUACCAUUAUUUUAGGAUC   2057 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0173D06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137699.1	ncRNA:20   AAAUUGUAAUAAAUUCCUAG   1   ||||*||||||||*|||||| targets:2038   UUUACCAUUAUUUUAGGAUC   2057 Target Full Sequence	2.5	Zea mays DNA cytosine methyltransferase Zmet 3 (LOC100192479), mRNA	NA	coding protein	psRNATarget