Search result

BaseInfo

ncRNA ID	novel_zma_miR13313
Species	Zea mays
Class	miRNA
Genome position	Chr10:47078941-47079002 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - AAGGAUUGAGAAGAGGAGGAGCAC - 24
Stem-loop(if miRNA)	--   U       -C  A      CC CC CC   GCU CCUCCUC  CU GAUCUU  C  C  C   ||| |||||||  || ||||||  |  |   CGA GGAGGAG  GA UUAGGA  G  G  C CA   -       AA  G      AC AA CA
Stem-loop sequence	GCUUCCUCCUCCCUAGAUCUUCCCCCCCCCCACGAAGCAAGGAUUGAGAAGAGGAGGAGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067987.2	ncRNA:24   CACGAGGAGGAGAAGAGUUAGGAA   1   |||||||||||||||||=|||||| targets:1189   GUGCUCCUCCUCUUCUCGAUCCUU   1212 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0014C08 mRNA, complete cds	NA	coding protein	psRNATarget
BT084267.2	ncRNA:24   CACGAGGAGGAGAAGAGUUAGGAA   1   |||||||||||||||||=|||||| targets:2269   GUGCUCCUCCUCUUCUCGAUCCUU   2292 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0095N09 mRNA, complete cds	NA	coding protein	psRNATarget
BT069061.2	ncRNA:24   CACGAGGAGGAGAAGAGUUAGGAA   1   *||||||||||||||||=|||||| targets:1106   UUGCUCCUCCUCUUCUCGAUCCUU   1129 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0152G15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677298.2	ncRNA:24   CACGAGGAGGAGAAGAGUUAGGAA   1   |****||||||||||||||||||* targets:323   GACGACCUCCUCUUCUCAAUCCUC   346 Target Full Sequence	1.0	PREDICTED: Zea mays F-box protein At4g22280 (LOC103651631), mRNA	NA	coding protein	psRNATarget