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BaseInfo

ncRNA ID	novel_zma_miR13310
Species	Zea mays
Class	miRNA
Genome position	Chr4:122344992-122345178 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	22
Mature sequence(if miRNA)	166 - UCUGAAGCUAGUGGAACUGUGU - 187
Stem-loop(if miRNA)	--     -A      GGAACUGUGUAAAGGCCUCGUAGUGUUACCCUGCCUCGCCUGCUCGGUAGAGGUGUAUGAGAAGUCGCGAUCCCUUGGC   UCUGA  GCUAGU                                                                               A   |||||  ||||||   AGGCU  ACGAGU                                                                               G AC     CG      ACUGACACUCGUGCCGAUCAUAUGGUCAAAAUGUGAGACGUCUCCAACGUGUAGAAAUGGGUGUUCAGUACAAUGGGUA
Stem-loop sequence	UCUGAAGCUAGUGGAACUGUGUAAAGGCCUCGUAGUGUUACCCUGCCUCGCCUGCUCGGUAGAGGUGUAUGAGAAGUCGCGAUCCCUUGGCAGAUGGGUAACAUGACUUGUGGGUAAAGAUGUGCAACCUCUGCAGAGUGUAAAACUGGUAUACUAGCCGUGCUCACAGUCAUGAGCAGCUCGGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054688.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:641   ACAAAGUUCCACUAGCUUCAGA   662 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0082P04 mRNA, complete cds	NA	coding protein	psRNATarget
BT062452.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:657   ACAAAGUUCCACUAGCUUCAGA   678 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0299E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT085686.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:644   ACAAAGUUCCACUAGCUUCAGA   665 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0047L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT055683.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:581   ACAAAGUUCCACUAGCUUCAGA   602 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0112J02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066164.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:641   ACAAAGUUCCACUAGCUUCAGA   662 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0047C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175762.1	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:641   ACAAAGUUCCACUAGCUUCAGA   662 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383091 (LOC100383091), mRNA	NA	coding protein	psRNATarget
EU940868.1	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||||| targets:1339   ACAAAGUUCCACUAGCUUCAGA   1360 Target Full Sequence	1.0	Zea mays clone 1165273 mRNA sequence	NA	coding protein	psRNATarget
BT064691.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*||||||||||||||=||| targets:635   ACAAAGUUCCACUAGCUUUAGA   656 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0035I03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085585.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*||||||||||||||=||| targets:631   ACAAAGUUCCACUAGCUUUAGA   652 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0036J03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940976.1	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*||||||||||||||=||| targets:601   ACAAAGUUCCACUAGCUUUAGA   622 Target Full Sequence	2.5	Zea mays clone 1226050 mRNA sequence	NA	coding protein	psRNATarget
BT068642.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*||||||||||||||*||| targets:646   ACAAAGUUCCACUAGCUUAAGA   667 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0358P09 mRNA, complete cds	NA	coding protein	psRNATarget
BT067944.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||*|| targets:649   ACAAAGUUCCACUAGCUUCCGA   670 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003J14 mRNA, complete cds	NA	coding protein	psRNATarget
BT084566.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*||||||||||*||||||| targets:655   ACAAAGUUCCACUAUCUUCAGA   676 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT054110.2	ncRNA:22   UGUGUCAAGGUGAUCGAAGUCU   1   |||*|||||||||||||||*|| targets:1903   ACAAAGUUCCACUAGCUUCCGA   1924 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105J21 mRNA, complete cds	NA	coding protein	psRNATarget