Search result

BaseInfo

ncRNA ID novel_zma_miR13306
Species Zea mays
Class miRNA
Genome position Chr4:153193718-153193804 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - UGUGAAUCAAGAAUAAGACAACAC - 24
Stem-loop(if miRNA) --    C                              --A   A
  GUUG CUUGUUCUUGAUUCACAGUAUUUGAGAACA   GUG A
  |||| ||||||||||||||||||||||||||||||   ||| C
  CAAC GAAUAAGAACUAAGUGUCGUAAACUCUUGU   UAC A
CA    A                              GGU   A
Stem-loop sequence GUUGCCUUGUUCUUGAUUCACAGUAUUUGAGAACAAGUGAACAACAUUGGUGUUCUCAAAUGCUGUGAAUCAAGAAUAAGACAACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539029.1
ncRNA:24   CACAACAGAAUAAGAACUAAGUGU   1
  ||||||||||=|||||||||||=|
targets:1477   GUGUUGUCUUGUUCUUGAUUCAUA   1500

2.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649755.2
ncRNA:24   CACAACAGAAUAAGAACUAAGUGU   1
  ||||||||||=|||||||||||=|
targets:1360   GUGUUGUCUUGUUCUUGAUUCAUA   1383

2.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X2, mRNA NA coding protein psRNATarget