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BaseInfo

ncRNA ID novel_zma_miR13291
Species Zea mays
Class miRNA
Genome position Chr3:6798538-6798608 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 22
Mature sequence(if miRNA) 1 - CCGGUGAAUUAUGGCGGAGCGG - 22
Stem-loop(if miRNA) --      AA   U  C      G    CC   G  G
  CCGGUG  UUA GG GGAGCG AUUC  GAA CU G
  ||||||  ||| || |||||| ||||  ||| ||
  GGCCAC  GAU CC UCUCGC UGAG  CUU GA C
CA      GG   U  C      -    -A   -  G
Stem-loop sequence CCGGUGAAUUAUGGCGGAGCGGAUUCCCGAAGCUGGCGAGUUCAGAGUCGCUCUCCCUUAGGGCACCGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170309.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |||||||||=||||||||||||
targets:79   CCGCUCCGCUAUAAUUCACCGG   100

1.5 Sequence 7973 from Patent EP2559767 NA coding protein psRNATarget
LQ241978.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |||||||||=||||||||||||
targets:79   CCGCUCCGCUAUAAUUCACCGG   100

1.5 Sequence 7973 from Patent EP2985353 NA coding protein psRNATarget
HI409848.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |||||||||=||||||||||||
targets:79   CCGCUCCGCUAUAAUUCACCGG   100

1.5 Sequence 7973 from Patent EP2074227 NA coding protein psRNATarget
BT042818.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  ||||||=||=||||||||||||
targets:599   CCGCUCUGCUAUAAUUCACCGG   620

2.5 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
BT069634.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |=|||||||=||||||||||||
targets:691   CUGCUCCGCUAUAAUUCACCGG   712

1.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
BT069634.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *|*||||||=||||||||||||
targets:585   GCACUCCGCUAUAAUUCACCGG   606

1.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |=|||||||=||||||||||||
targets:691   CUGCUCCGCUAUAAUUCACCGG   712

1.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
NM_001176828.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *|*||||||=||||||||||||
targets:585   GCACUCCGCUAUAAUUCACCGG   606

1.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
EU970212.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *||||||||=||||||||||||
targets:471   GCGCUCCGCUAUAAUUCACCGG   492

1.5 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB170161.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *|*|||*||=||||||||||||
targets:54   GCACUCAGCUAUAAUUCACCGG   75

2.5 Sequence 7825 from Patent EP2559767 NA coding protein psRNATarget
HI409700.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *|*|||*||=||||||||||||
targets:54   GCACUCAGCUAUAAUUCACCGG   75

2.5 Sequence 7825 from Patent EP2074227 NA coding protein psRNATarget
LQ241830.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *|*|||*||=||||||||||||
targets:54   GCACUCAGCUAUAAUUCACCGG   75

2.5 Sequence 7825 from Patent EP2985353 NA coding protein psRNATarget
XM_008650945.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *||||||||=||||||||||||
targets:836   GCGCUCCGCUAUAAUUCACCGG   857

1.5 PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA NA coding protein psRNATarget
EU952069.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *||||||||=||||||||||||
targets:844   GCGCUCCGCUAUAAUUCACCGG   865

1.5 Zea mays clone 1155789 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ078322.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |*|||||||=||||||||||||
targets:15   CAGCUCCGCUAUAAUUCACCGG   36

1.5 TSA: Zea mays contig13961, mRNA sequence NA coding protein psRNATarget
XM_020541939.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *=|||||||=||||||||||||
targets:1025   AUGCUCCGCUAUAAUUCACCGG   1046

1.5 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541938.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  *=|||||||=||||||||||||
targets:1038   AUGCUCCGCUAUAAUUCACCGG   1059

1.5 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA NA coding protein psRNATarget
BT064671.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  ||*||||||=||||||||||||
targets:1075   CCACUCCGCUAUAAUUCACCGG   1096

1.5 Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds NA coding protein psRNATarget
EU947420.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  =|*||||||=||||||||||||
targets:314   UCACUCCGCUAUAAUUCACCGG   335

1.5 Zea mays clone 342805 mRNA sequence NA coding protein psRNATarget
EZ092215.1
ncRNA:22   GGCGAGGCGGUAUUAAGUGGCC   1
  |*|||||*|=||||||||||||
targets:14   CAGCUCCUCUAUAAUUCACCGG   35

2.5 TSA: Zea mays contig27864, mRNA sequence NA coding protein psRNATarget
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