Search result

BaseInfo

ncRNA ID	novel_zma_miR13287
Species	Zea mays
Class	miRNA
Genome position	Chr3:2220427-2220512 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - CCAGCGACUGUGGCGGAGGCCUAG - 24
Stem-loop(if miRNA)	--            A   -    ----A      -     --   GU   AGGCCUUCGUCA AGU GCUG     AUGGAG CGAAG  GGU  C   |||||||||||| ||| ||||     |||||| |||||  |||   UCCGGAGGCGGU UCA CGAC     UGUCUC GUUUC  CCG  C GA            G   G    CAGAC      U     GU   UC
Stem-loop sequence	AGGCCUUCGUCAAAGUGCUGAAUGGAGCGAAGGGUGUCCCUGCCUGCUUUGUCUCUGUCAGACCAGCGACUGUGGCGGAGGCCUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU958178.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   |||*|||||||||||*|||||||* targets:1047   CUACGCCUCCGCCACCGUCGCUGC   1070 Target Full Sequence	2.5	Zea mays clone 1677024 pectinesterase-2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154776.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   |||*|||||||||||*|||||||* targets:1047   CUACGCCUCCGCCACCGUCGCUGC   1070 Target Full Sequence	2.5	Zea mays pectinesterase-2 (LOC100281856), mRNA	NA	coding protein	psRNATarget
BT065309.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   **||||*|=||||||||||||||* targets:56   GAAGGCGUUCGCCACAGUCGCUGA   79 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0092H17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175484.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   **||||*|=||||||||||||||* targets:56   GAAGGCGUUCGCCACAGUCGCUGA   79 Target Full Sequence	3.0	Zea mays ADP-ribosylation factor A1F (LOC100382775), mRNA	NA	coding protein	psRNATarget
AY104231.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   **||||*|=||||||||||||||* targets:104   GAAGGCGUUCGCCACAGUCGCUGA   127 Target Full Sequence	3.0	Zea mays PCO085486 mRNA sequence	NA	coding protein	psRNATarget
BT016607.1	ncRNA:24   GAUCCGGAGGCGGUGUCAGCGACC   1   **||||*|=||||||||||||||* targets:117   GAAGGCGUUCGCCACAGUCGCUGA   140 Target Full Sequence	3.0	Zea mays clone Contig440 mRNA sequence	NA	coding protein	psRNATarget