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BaseInfo

ncRNA ID novel_zma_miR13277
Species Zea mays
Class miRNA
Genome position Chr3:137829606-137829677 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 22
Mature sequence(if miRNA) 51 - AAACACAAGGGCAUAUAGAGAC - 72
Stem-loop(if miRNA) --        GGG    U            A     
  AAACACAA   CAUA AGAGACUUCAAC AGUCCA
  ||||||||   |||| |||||||||||| |||||G
  UUUGUGUU   GUGU UCUUUGAAGUUG UUAGGU
AG        ACA    -            A     
Stem-loop sequence AAACACAAGGGCAUAUAGAGACUUCAACAAGUCCAGUGGAUUAGUUGAAGUUUCUUGUGACAUUGUGUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538479.1
ncRNA:22   CAGAGAUAUACGGGAACACAAA   1
  *|*||||*||||||||*|||||
targets:568   CUAUCUAAAUGCCCUUCUGUUU   589

2.5 PREDICTED: Zea mays TP53-regulating kinase (LOC100502223), transcript variant X1, mRNA NA coding protein psRNATarget
BT062113.1
ncRNA:22   CAGAGAUAUACGGGAACACAAA   1
  *|*||||*||||||||*|||||
targets:354   CUAUCUAAAUGCCCUUCUGUUU   375

2.5 Zea mays full-length cDNA clone ZM_BFb0215N14 mRNA, complete cds NA coding protein psRNATarget