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BaseInfo

ncRNA ID	novel_zma_miR13274
Species	Zea mays
Class	miRNA
Genome position	Chr3:160337569-160337657 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	23
Mature sequence(if miRNA)	1 - GCCAGAUCGCGGGUACUCGGCAA - 23
Stem-loop(if miRNA)	--A         - -    CGA              -CCUA     A    CCGAGUGCC G GAUC   GGCACUCGGCAAAG     UUUAA A    ||||||||| | ||||   ||||||||||||||     |||||    GGCUCAUGG C CUAG   CCGUGAGCCGUUUU     AAAUU A AAC         G G    --A              UUUAA     U
Stem-loop sequence	ACCGAGUGCCGGAUCCGAGGCACUCGGCAAAGCCUAUUUAAAAAUUUAAAAAUUUUUUUGCCGAGUGCCAGAUCGCGGGUACUCGGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406093.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:85   UUGCCGAGUGCCCGCAAUCUGGC   107 Target Full Sequence	2.5	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:85   UUGCCGAGUGCCCGCAAUCUGGC   107 Target Full Sequence	2.5	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
JB166554.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:85   UUGCCGAGUGCCCGCAAUCUGGC   107 Target Full Sequence	2.5	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:907   UUGCCGAGUGCCCGCAAUCUGGC   929 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
BT065228.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:907   UUGCCGAGUGCCCGCAAUCUGGC   929 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU942429.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:918   UUGCCGAGUGCCCGCAAUCUGGC   940 Target Full Sequence	2.5	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1326   UUGCCGAGUGCCCGCAAUCUGGC   1348 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1330   UUGCCGAGUGCCCGCAAUCUGGC   1352 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1405   UUGCCGAGUGCCCGCAAUCUGGC   1427 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1410   UUGCCGAGUGCCCGCAAUCUGGC   1432 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1410   UUGCCGAGUGCCCGCAAUCUGGC   1432 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1415   UUGCCGAGUGCCCGCAAUCUGGC   1437 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1456   UUGCCGAGUGCCCGCAAUCUGGC   1478 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1539   UUGCCGAGUGCCCGCAAUCUGGC   1561 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1801   UUGCCGAGUGCCCGCAAUCUGGC   1823 Target Full Sequence	2.5	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
BT036012.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1790   UUGCCGAGUGCCCGCAAUCUGGC   1812 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:23   AACGGCUCAUGGGCGCUAGACCG   1   |||||||||=|||||*||||||| targets:1790   UUGCCGAGUGCCCGCAAUCUGGC   1812 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget