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BaseInfo

ncRNA ID	novel_zma_miR13271
Species	Zea mays
Class	miRNA
Genome position	Chr3:225855987-225856099 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	22
Mature sequence(if miRNA)	92 - CUUGUCGAUGACCACGUUGGUG - 113
Stem-loop(if miRNA)	--         GA    GU      ------C   U   ---      A  A   --C    GU   CUUGUCGAU  CCAC  UGGUGC       UGG GGA   CGCGGC CC UGU   CCAG  G   |||||||||  ||||  ||||||       ||| |||   |||||| || |||   ||||   GAGCAGCUG  GGUG  ACCGCG       ACC CCU   GCGCCG GG ACA   GGUU  U GG         GG    --      UCGCUAU   U   UAU      -  -   ACC    GG
Stem-loop sequence	CUUGUCGAUGACCACGUUGGUGCCUGGUGGACGCGGCACCAUGUCCCAGGUGUGGUUGGCCAACAGGGCCGCGUAUUCCUCCAUAUCGCUGCGCCAGUGGGGGUCGACGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
M94481.1	ncRNA:22   GUGGUUGCACCAGUAGCUGUUC   1   |||||||||||||||||=|||| targets:1325   CACCAACGUGGUCAUCGGCAAG   1346 Target Full Sequence	1.5	Zea mays copia-like retrotransposon reverse transcriptase gene, 3' end	NA	coding protein	psRNATarget
AY107980.1	ncRNA:22   GUGGUUGCACCAGUAGCUGUUC   1   *|=|=|||||||||||||||*| targets:57   GAUCGACGUGGUCAUCGACACG   78 Target Full Sequence	2.5	Zea mays PCO142484 mRNA sequence	NA	coding protein	psRNATarget
XM_008658333.2	ncRNA:22   GUGGUUGCACCAGUAGCUGUUC   1   *|=|=|||||||||||||||*| targets:763   GAUCGACGUGGUCAUCGACACG   784 Target Full Sequence	2.5	PREDICTED: Zea mays outer envelope pore protein 16, chloroplastic (LOC103635971), mRNA	NA	coding protein	psRNATarget
BT042081.1	ncRNA:22   GUGGUUGCACCAGUAGCUGUUC   1   ||**||||||||*||||||||| targets:614   CAAGAACGUGGUGAUCGACAAG   635 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0126J14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148336.1	ncRNA:22   GUGGUUGCACCAGUAGCUGUUC   1   ||**||||||||*||||||||| targets:614   CAAGAACGUGGUGAUCGACAAG   635 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100273946), mRNA	NA	coding protein	psRNATarget