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BaseInfo

ncRNA ID novel_zma_miR13265
Species Zea mays
Class miRNA
Genome position Chr10:119897906-119898072 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 144 - AGAGGAGGCCGUAGAAAGUUAGCA - 167
Stem-loop(if miRNA) --     A                    U               GA   GG  -G  A  A      -------G   C     ACCG
  AGAGG GGCCGUAGAAAGUUAGCAUG GCAGCUAACUUCCUA  GGC  UC  UA GA GUUAGC        GCU GUUUG    C
  ||||| |||||||||||||||||||| |||||||||||||||  |||  ||  || || ||||||        ||| |||||
  UCUCC UCGGCAUCUUUCAAUCGUAC CGUCGAUUGAAGGAU  CCG  AG  AU CU CAAUCG        CGA UAGAC    A
GA     G                    C               -G   GA  AG  C  C      AAAGUCAA   C     GCCC
Stem-loop sequence AGAGGAGGCCGUAGAAAGUUAGCAUGUGCAGCUAACUUCCUAGAGGCGGUCGUAAGAAGUUAGCGGCUCGUUUGACCGCACCCGCAGAUCAGCAACUGAAAGCUAACCUCCUAGAGAAGGCCGUAGGAAGUUAGCUGCCCAUGCUAACUUUCUACGGCUGCCUCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   ACGAUUGAAAGAUGCCGGAGGAGA   1
  *|||||||||||||||||||||||
targets:1129   CGCUAACUUUCUACGGCCUCCUCU   1152

0.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   ACGAUUGAAAGAUGCCGGAGGAGA   1
  |||*|||||*|||||*||||||||
targets:1170   UGCAAACUUCCUACGACCUCCUCU   1193

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget