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BaseInfo

ncRNA ID novel_zma_miR13264
Species Zea mays
Class miRNA
Genome position Chr3:202324354-202324419 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AAACCGGAGAGGAUUGGAGGGGCU - 24
Stem-loop(if miRNA) -AAAC     AG                  CA
     CGGAG  GAUUGGAGGGGCUAAAAU  A
     |||||  ||||||||||||||||||  C
     GUCUC  CUAAUUUCCCCGAUUUUA  U
UUUUU     CU                  UU
Stem-loop sequence AAACCGGAGAGGAUUGGAGGGGCUAAAAUCAACUUUAUUUUAGCCCCUUUAAUCUCCUCUGUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543912.1
ncRNA:24   UCGGGGAGGUUAGGAGAGGCCAAA   1
  |||||||||||||||=||||||||
targets:4128   AGCCCCUCCAAUCCUUUCCGGUUU   4151

1.5 PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA NA coding protein psRNATarget
XM_008654495.2
ncRNA:24   UCGGGGAGGUUAGGAGAGGCCAAA   1
  |||||||=||||||*|||||||||
targets:1114   AGCCCCUUCAAUCCCCUCCGGUUU   1137

2.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
XM_008664337.2
ncRNA:24   UCGGGGAGGUUAGGAGAGGCCAAA   1
  |*=|=|||||||||||||||||||
targets:2085   AUUCUCUCCAAUCCUCUCCGGUUU   2108

0.0 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget
EU957568.1
ncRNA:24   UCGGGGAGGUUAGGAGAGGCCAAA   1
  |||*|*||||||=|||||||||||
targets:916   AGCGCAUCCAAUUCUCUCCGGUUU   939

2.5 Zea mays clone 1597470 hypothetical protein mRNA, complete cds NA coding protein psRNATarget