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BaseInfo

ncRNA ID novel_zma_miR13250
Species Zea mays
Class miRNA
Genome position Chr2:22815152-22815210 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 23
Mature sequence(if miRNA) 1 - AAGUAACUAGAACGGAGUGACUC - 23
Stem-loop(if miRNA) --          CU     UUG    UGU
  GUCGUUCUGU  UAGUU   UUGU   U
  ||||||||||  |||||   ||||   U
  CAGUGAGGCA  AUCAA   AAUA   G
CU          AG     UGA    UUG
Stem-loop sequence GUCGUUCUGUCUUAGUUUUGUUGUUGUUUGGUUAUAAAGUAACUAGAACGGAGUGACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542825.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  *|||||||=||||||||||||||
targets:705   AAGUCACUUCGUUCUAGUUACUU   727

1.0 PREDICTED: Zea mays UPF0051 protein ABCI8, chloroplastic-like (LOC109941650), mRNA NA coding protein psRNATarget
JB170147.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||*|||||||||||||||||||
targets:108   GAGCCACUCCGUUCUAGUUACUU   130

0.0 Sequence 7811 from Patent EP2559767 NA coding protein psRNATarget
HI409686.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||*|||||||||||||||||||
targets:108   GAGCCACUCCGUUCUAGUUACUU   130

0.0 Sequence 7811 from Patent EP2074227 NA coding protein psRNATarget
LQ241816.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||*|||||||||||||||||||
targets:108   GAGCCACUCCGUUCUAGUUACUU   130

0.0 Sequence 7811 from Patent EP2985353 NA coding protein psRNATarget
JB169087.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||**||||||||||||||*|||
targets:140   GAGCGACUCCGUUCUAGUUUCUU   162

2.5 Sequence 6751 from Patent EP2559767 NA coding protein psRNATarget
LQ240756.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||**||||||||||||||*|||
targets:140   GAGCGACUCCGUUCUAGUUUCUU   162

2.5 Sequence 6751 from Patent EP2985353 NA coding protein psRNATarget
HI408626.1
ncRNA:23   CUCAGUGAGGCAAGAUCAAUGAA   1
  |||**||||||||||||||*|||
targets:140   GAGCGACUCCGUUCUAGUUUCUU   162

2.5 Sequence 6751 from Patent EP2074227 NA coding protein psRNATarget
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