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BaseInfo

ncRNA ID novel_zma_miR13241
Species Zea mays
Class miRNA
Genome position Chr3:169266802-169266890 [+]
Reference genome RefGen_v4
Source SRR1997866
Length 24
Mature sequence(if miRNA) 1 - AUAUGGAUUAAAUGAGAUUAGAAA - 24
Stem-loop(if miRNA) --AUA      A    A    A  ----AAA     AAAAA     UU
     UGGAUU AAUG GAUU GA       AAAUC     UAAGU  A
     |||||| |||| |||| ||       |||||     |||||  G
     ACCUAA UUAC CUAA CU       UUUAG     GUUCG  U
AGUAC      C    A    C  ACUCAAA     ----G     UU
Stem-loop sequence AUAUGGAUUAAAUGAGAUUAGAAAAAAAUCAAAAAUAAGUUUAGUUUGCUUGGGAUUUAAACUCAUCCAAUCACAUUCAAUCCACAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008672266.2
ncRNA:24   AA--AGAUUAGAGUAAAUUAGGUAUA   1
  ||--||||||||||||*|||||||||
targets:1194   UUCAUCUAAUCUCAUUCAAUCCAUAU   1219

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   AA--AGAUUAGAGUAAAUUAGGUAUA   1
  ||--||||||||||||*|||||||||
targets:942   UUCAUCUAAUCUCAUUCAAUCCAUAU   967

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget