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BaseInfo

ncRNA ID	novel_zma_miR13224
Species	Zea mays
Class	miRNA
Genome position	Chr3:148902434-148902555 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	99 - UAGGUAAACUGCUGGAGAUAGCCU - 122
Stem-loop(if miRNA)	--A      A       A       AAUUUA    A      UGU    C   G  GA    AC    CUAUCU CAGCAGU UAUCUAU      UCUA AAUCAU   UUUA ACU UA  UUGC  U    |||||| ||||||| |||||||      |||| ||||||   |||| ||| ||  ||||  A    GAUAGA GUCGUCA AUGGAUA      AGGU UUGGUA   AGAU UGA AU  GACG  U UCC      G       A       -----G    A      --U    U   G  GA    CU
Stem-loop sequence	ACUAUCUACAGCAGUAUAUCUAUAAUUUAUCUAAAAUCAUUGUUUUACACUGUAGAUUGCACUAUUCGCAGAGUAGAGUUUAGAUAUGGUUAUGGAGAUAGGUAAACUGCUGGAGAUAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008678875.2	ncRNA:24   UCCGAUAGAGGUCGUCA-AAUGGAU   1   |||||||||||||||||-||||||| targets:1794   AGGCUAUCUCCAGCAGUCUUACCUA   1818 Target Full Sequence	3.0	PREDICTED: Zea mays beta-1,3-galactosyltransferase sqv-2 (LOC100283067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671313.2	ncRNA:24   UCCGAUAGAGGUCGUCAAAUGGAU   1   ||*=||||||||||||*||||||| targets:1726   AGAUUAUCUCCAGCAGCUUACCUA   1749 Target Full Sequence	1.5	PREDICTED: Zea mays putative receptor-like protein kinase (LOC103646603), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008671312.2	ncRNA:24   UCCGAUAGAGGUCGUCAAAUGGAU   1   ||*=||||||||||||*||||||| targets:1833   AGAUUAUCUCCAGCAGCUUACCUA   1856 Target Full Sequence	1.5	PREDICTED: Zea mays putative receptor-like protein kinase (LOC103646603), transcript variant X5, mRNA	NA	coding protein	psRNATarget
AY110584.1	ncRNA:24   UCCGAUAGAGGUCGUCAAAUGGAU   1   |**|||||*|=||||||||||||| targets:99   AAACUAUCCCUAGCAGUUUACCUA   122 Target Full Sequence	2.0	Zea mays CL33067_1 mRNA sequence	NA	coding protein	psRNATarget
EZ056628.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:120   UGGUGUGUAUCUUCAGCAGUUGACCUA   146 Target Full Sequence	2.5	TSA: Zea mays contig57750, mRNA sequence	NA	coding protein	psRNATarget
AY107361.2	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:588   UGGUGUGUAUCUUCAGCAGUUGACCUA   614 Target Full Sequence	2.5	Zea mays PCO100387 mRNA sequence	NA	coding protein	psRNATarget
BT063339.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1256   UGGUGUGUAUCUUCAGCAGUUGACCUA   1282 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0054J08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538971.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1273   UGGUGUGUAUCUUCAGCAGUUGACCUA   1299 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform (LOC100282594), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008649642.2	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1313   UGGUGUGUAUCUUCAGCAGUUGACCUA   1339 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform (LOC100282594), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU961577.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1338   UGGUGUGUAUCUUCAGCAGUUGACCUA   1364 Target Full Sequence	2.5	Zea mays clone 236679 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155502.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1338   UGGUGUGUAUCUUCAGCAGUUGACCUA   1364 Target Full Sequence	2.5	Zea mays Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform (LOC100282594), mRNA	NA	coding protein	psRNATarget
BT063147.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1390   UGGUGUGUAUCUUCAGCAGUUGACCUA   1416 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0031D14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649641.2	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1413   UGGUGUGUAUCUUCAGCAGUUGACCUA   1439 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform (LOC100282594), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT064515.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1472   UGGUGUGUAUCUUCAGCAGUUGACCUA   1498 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176J05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649640.2	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1450   UGGUGUGUAUCUUCAGCAGUUGACCUA   1476 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform (LOC100282594), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065064.1	ncRNA:24   UCCG---AUAGAGGUCGUCAAAUGGAU   1   *||=---|||||=||||||||*||||| targets:1518   UGGUGUGUAUCUUCAGCAGUUGACCUA   1544 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185G20 mRNA, complete cds	NA	coding protein	psRNATarget