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BaseInfo

ncRNA ID	novel_zma_miR13215
Species	Zea mays
Class	miRNA
Genome position	Chr1:188976151-188976215 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	1 - CCUGGGCGAAGGGCGCGGGCGCAC - 24
Stem-loop(if miRNA)	--        UC    CGCC        -  U      GCGCUCGC  GCCU    UCGCCUAG CC GGCC   ||||||||  ||||    |||||||| || |||U   CGCGGGCG  CGGG    AGCGGGUC GG CCGG CA        --    ---A        C  U
Stem-loop sequence	GCGCUCGCUCGCCUCGCCUCGCCUAGCCUGGCCUGGCCUGGCCUGGGCGAAGGGCGCGGGCGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ062367.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:27   CUGAUGCCGGCGCCUUUCGCCCAGG   51 Target Full Sequence	2.5	TSA: Zea mays contig63489, mRNA sequence	NA	coding protein	psRNATarget
KJ726795.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:583   CUGAUGCCGGCGCCUUUCGCCCAGG   607 Target Full Sequence	2.5	Zea mays clone pUT2284 bHLH transcription factor (bHLH172) mRNA, partial cds	NA	coding protein	psRNATarget
EU966487.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:652   CUGAUGCCGGCGCCUUUCGCCCAGG   676 Target Full Sequence	2.5	Zea mays clone 294826 bHLH transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
BT039742.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:613   CUGAUGCCGGCGCCUUUCGCCCAGG   637 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0042O08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157324.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:607   CUGAUGCCGGCGCCUUUCGCCCAGG   631 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284429 (TIDP2894), mRNA	NA	coding protein	psRNATarget
EU968313.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:607   CUGAUGCCGGCGCCUUUCGCCCAGG   631 Target Full Sequence	2.5	Zea mays clone 318691 bHLH transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148235.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ***|||=|||||||||||*||||| targets:636   CCUCGCUCGCGCCCUUCGGCCAGG   659 Target Full Sequence	2.5	Zea mays Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (LOC100273836), mRNA	NA	coding protein	psRNATarget
BT041890.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ***|||=|||||||||||*||||| targets:636   CCUCGCUCGCGCCCUUCGGCCAGG   659 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0075N22 mRNA, complete cds	NA	coding protein	psRNATarget
AY108968.1	ncRNA:24   CAC-GCGGGCGCGGGAAGCGGGUCC   1   *||-=|||*|||||=|||||||||| targets:654   CUGAUGCCGGCGCCUUUCGCCCAGG   678 Target Full Sequence	2.5	Zea mays PCO132092 mRNA sequence	NA	coding protein	psRNATarget
EU953017.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ***|||=|||||||||||*||||| targets:650   CCUCGCUCGCGCCCUUCGGCCAGG   673 Target Full Sequence	2.5	Zea mays clone 1375536 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062854.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ***|||=|||||||||||*||||| targets:645   CCUCGCUCGCGCCCUUCGGCCAGG   668 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002F18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149098.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ***|||=|||||||||||*||||| targets:650   CCUCGCUCGCGCCCUUCGGCCAGG   673 Target Full Sequence	2.5	Zea mays Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (LOC100274830), mRNA	NA	coding protein	psRNATarget
EU941599.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ||-|||||*|||||*||||||||| targets:45   GU-CGCCCUCGCCCCUCGCCCAGG   67 Target Full Sequence	2.5	Zea mays clone 1466463 mRNA sequence	NA	coding protein	psRNATarget
EU941033.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ||-|||||*|||||*||||||||| targets:10   GU-CGCCCUCGCCCCUCGCCCAGG   32 Target Full Sequence	2.5	Zea mays clone 1278862 mRNA sequence	NA	coding protein	psRNATarget
XM_008647355.2	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ||-|||||*|||||*||||||||| targets:28   GU-CGCCCUCGCCCCUCGCCCAGG   50 Target Full Sequence	2.5	PREDICTED: Zea mays Pumilio homolog 23 (LOC100383838), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538799.1	ncRNA:24   CACGCGGGCGCGGGAAGCGGGUCC   1   ||-|||||*|||||*||||||||| targets:58   GU-CGCCCUCGCCCCUCGCCCAGG   80 Target Full Sequence	2.5	PREDICTED: Zea mays Pumilio homolog 23 (LOC100383838), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU962084.1	ncRNA:24   CAC--GCGGGCGCGGGAAGCGGGUCC   1   |||--||||**||||||||||||||* targets:82   GUGACCGCCGCCGCCCUUCGCCCAGC   107 Target Full Sequence	3.0	Zea mays clone 240106 outer mitochondrial membrane protein porin mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001155629.1	ncRNA:24   CAC--GCGGGCGCGGGAAGCGGGUCC   1   |||--||||**||||||||||||||* targets:82   GUGACCGCCGCCGCCCUUCGCCCAGC   107 Target Full Sequence	3.0	Zea mays outer mitochondrial membrane protein porin (LOC100282722), mRNA	NA	coding protein	psRNATarget
BT064182.1	ncRNA:24   CAC--GCGGGCGCGGGAAGCGGGUCC   1   |||--||||**||||||||||||||* targets:20   GUGACCGCCGCCGCCCUUCGCCCAGC   45 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0145H15 mRNA, complete cds	NA	coding protein	psRNATarget