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BaseInfo

ncRNA ID novel_zma_miR13201
Species Zea mays
Class miRNA
Genome position Chr1:273878699-273878768 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 24
Mature sequence(if miRNA) 1 - GACCAUAGCACUCGACAAAGAAGG - 24
Stem-loop(if miRNA) -----   CAU        A        GAACA  UG 
     GAC   AGCACUCG CAAAGAAG     AC  GG
     |||   |||||||| ||||||||     ||  |C
     CUG   UCGUGAGC GUUUCUUC     UG  CA
UCCCG   ---        C        -GAAA  GU 
Stem-loop sequence GACCAUAGCACUCGACAAAGAAGGAACAACUGGGCACUGGUAAAGCUUCUUUGCCGAGUGCUGUCGCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB167488.1
ncRNA:24   GGAAGAAACAGCUCACGAUACCAG   1
  **|||||||*||||||||||||||
targets:53   GGUUCUUUGCCGAGUGCUAUGGUC   76

1.0 Sequence 5152 from Patent EP2559767 NA coding protein psRNATarget
LQ239157.1
ncRNA:24   GGAAGAAACAGCUCACGAUACCAG   1
  **|||||||*||||||||||||||
targets:53   GGUUCUUUGCCGAGUGCUAUGGUC   76

1.0 Sequence 5152 from Patent EP2985353 NA coding protein psRNATarget
HI407027.1
ncRNA:24   GGAAGAAACAGCUCACGAUACCAG   1
  **|||||||*||||||||||||||
targets:53   GGUUCUUUGCCGAGUGCUAUGGUC   76

1.0 Sequence 5152 from Patent EP2074227 NA coding protein psRNATarget