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BaseInfo

ncRNA ID	novel_zma_miR13199
Species	Zea mays
Class	miRNA
Genome position	Chr1:256775011-256775185 [+]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	152 - ACAUUCGAUGUGAUAGGAGCUAAA - 175
Stem-loop(if miRNA)	--    -  GG        A  C      -     AAAUA  A    G    AUAAACCCAACCAACU    ------U   UUCGUCUCGUCUUUUA   UAGC CC  GUCACAUC AG GUUUGA CUUUU     GG GUAU AAAU                GGAC       AGA                A   |||| ||  |||||||| || |||||| |||||     || |||| ||||                ||||       |||                U   AUCG GG  UAGUGUAG UU CAAACU GGAGG     CC CAUA UUUA                AGCC       UUG                C AA    A  -A        C  A      U     CAAGG  -    A    ------------CAUC    UAAUAUU   AUUAAACAGUCGGCUU
Stem-loop sequence	UAGCCCGGGUCACAUCAAGCGUUUGACUUUUAAAUAGGAGUAUGAAAUAUAAACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGGAACGGAGGUUCAAACAUUCGAUGUGAUAGGAGCUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163849.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||||||||||||||||||||| targets:5   UUUAGCUCCUAUCACAUCGAAUGU   28 Target Full Sequence	0.0	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||||||||||||||||||||| targets:5   UUUAGCUCCUAUCACAUCGAAUGU   28 Target Full Sequence	0.0	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||||||||||||||||||||| targets:5   UUUAGCUCCUAUCACAUCGAAUGU   28 Target Full Sequence	0.0	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:5   UUUAGCCCCUAUCACAUCGAAUGU   28 Target Full Sequence	1.0	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:5   UUUAGCCCCUAUCACAUCGAAUGU   28 Target Full Sequence	1.0	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:5   UUUAGCCCCUAUCACAUCGAAUGU   28 Target Full Sequence	1.0	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
BT065587.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:336   UUUAGCCCCUAUCACAUCGAAUGU   359 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds	NA	coding protein	psRNATarget
EU968043.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:1417   UUUAGCCCCUAUCACAUCGAAUGU   1440 Target Full Sequence	1.0	Zea mays clone 313378 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:836   UUUAGCCCCUAUCACAUCGAAUGU   859 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:836   UUUAGCCCCUAUCACAUCGAAUGU   859 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
XM_008667260.2	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:1985   UUUAGCCCCUAUCACAUCGAAUGU   2008 Target Full Sequence	1.0	PREDICTED: Zea mays allene oxide synthase 1, chloroplastic (LOC103644066), mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:663   UUUAGCCCCUAUCACAUCGAAUGU   686 Target Full Sequence	1.0	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   ||||||*||||||||||||||||| targets:657   UUUAGCCCCUAUCACAUCGAAUGU   680 Target Full Sequence	1.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||=*=|||||||||||||||| targets:5   UUUAGUCUCUAUCACAUCGAAUGU   28 Target Full Sequence	3.0	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235520.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||=*=|||||||||||||||| targets:5   UUUAGUCUCUAUCACAUCGAAUGU   28 Target Full Sequence	3.0	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   AAAUCGAGGAUAGUGUAGCUUACA   1   |||||=*=|||||||||||||||| targets:5   UUUAGUCUCUAUCACAUCGAAUGU   28 Target Full Sequence	3.0	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget