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BaseInfo

ncRNA ID	novel_zma_miR13179
Species	Zea mays
Class	miRNA
Genome position	Chr3:131387571-131387689 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	96 - AAUGGAAUAAAGUGGAGAGACUAA - 119
Stem-loop(if miRNA)	--    C   A                  C C      AC      UA          C   AGUC CUC AUUUUAUUUCAUUUUAGU C UAAAUU  UAAAUA  GAAACUAAAA U   |||| ||| |||||||||||||||||| | ||||||  ||||||  |||||||||| C   UCAG GAG UGAAAUAAGGUAAAAUCA G AUUUAA  AUUUAU  CUUUGAUUUU U AA    A   G                  A U      CA      CC          A
Stem-loop sequence	AGUCCCUCAAUUUUAUUUCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAACAAUUUAUGAACUAAAAUGGAAUAAAGUGGAGAGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967664.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||||||||||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	0.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||||||||||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	0.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||||||||=||||||||||| targets:2149   UUAGUCUCUCCAUUUUAUUCCAUU   2172 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||||*||=||||||||||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||||*||=||||||||||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||*||||=||||||||||| targets:199   UUAGUCUAUCCAUUUUAUUCCAUU   222 Target Full Sequence	2.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT083561.2	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||||||*||||=||||||||||| targets:202   UUAGUCUAUCCAUUUUAUUCCAUU   225 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   |||*|||=||||=||||||||||| targets:2082   UUAAUCUUUCCAUUUUAUUCCAUU   2105 Target Full Sequence	2.5	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*|||||*||||||||||| targets:141   UUAGUCCCUCCAAUUUAUUCCAUU   164 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AAUCAGAGAGGUGAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget