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BaseInfo

ncRNA ID	novel_zma_miR13178
Species	Zea mays
Class	miRNA
Genome position	Chr9:17057382-17057447 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	1 - GUGUAUUGGGUGGGAUUGAGAUGG - 24
Stem-loop(if miRNA)	---A     G   UG      -    GA  U   A     CUUAG UCU  UUCGGU UAUU  UA UCC U     ||||| |||  |||||| ||||  || |||     GAGUU AGG  GGGUUA GUGA  AU AGG G GGUA     -   GU      U    -G  U   U
Stem-loop sequence	ACUUAGGUCUUGUUCGGUUAUUGAUAUUCCAUGUGGAUUAGAGUGUAUUGGGUGGGAUUGAGAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406890.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   *||||||||||=|||||||||||| targets:90   ACAUCUCAAUCUCACCCAAUACAC   113 Target Full Sequence	1.5	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   *||||||||||=|||||||||||| targets:90   ACAUCUCAAUCUCACCCAAUACAC   113 Target Full Sequence	1.5	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   *||||||||||=|||||||||||| targets:90   ACAUCUCAAUCUCACCCAAUACAC   113 Target Full Sequence	1.5	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   *|||||||||||||=||||||||| targets:1582   ACAUCUCAAUCCCAUCCAAUACAC   1605 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681684.2	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   *||||||||||=|||||||||||| targets:2874   ACAUCUCAAUCUCACCCAAUACAC   2897 Target Full Sequence	1.5	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||||||||||| targets:57   CCACCCCAAUCCCACCCAAUACAC   80 Target Full Sequence	1.0	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||||||||||| targets:57   CCACCCCAAUCCCACCCAAUACAC   80 Target Full Sequence	1.0	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240934.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||||||||||| targets:57   CCACCCCAAUCCCACCCAAUACAC   80 Target Full Sequence	1.0	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||=|||||||| targets:137   CCACCCCAAUCCCACUCAAUACAC   160 Target Full Sequence	2.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||=|||||||| targets:1235   CCACCCCAAUCCCACUCAAUACAC   1258 Target Full Sequence	2.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||=|||||||| targets:1235   CCACCCCAAUCCCACUCAAUACAC   1258 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   GGUAGAGUUAGGGUGGGUUAUGUG   1   |||*|*|||||||||=|||||||| targets:2347   CCACCCCAAUCCCACUCAAUACAC   2370 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget