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BaseInfo

ncRNA ID	novel_zma_miR13160
Species	Zea mays
Class	miRNA
Genome position	Chr9:158514153-158514319 [+]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	144 - CAGUGAAUUAUAGCGGAGCGACUC - 167
Stem-loop(if miRNA)	--            --GC         A    A   C        -CA   C     AA   UA C     -------      -   A   GUUGCUCCGCUG    UCACUGGAC GUCC GUG ACACCGGA   UGU CGGUG  UUA  G GGAGC       GAAUUC CCG A   ||||||||||||    ||||||||| |||| ||| ||||||||   ||| |||||  |||  | |||||       |||||| |||   CAGCGAGGCGAU    AGUGACCUG CAGG CAC UGUGGCCU   ACA GCCAC  GGU  C UCUCG       CUUGAG GGU G CU            AUUA         A    C   A        AUC   A     GA   UC U     CAGAGAU      C   C
Stem-loop sequence	GUUGCUCCGCUGGCUCACUGGACAGUCCAGUGCACACCGGACAUGUCCGGUGAAUUAUAGCGGAGCGAAUUCCCGAAGCUGGCGAGUUCUAGAGACGCUCUUCCUUGGAGCACCGAACACUAUCCGGUGUACACCGGACAGUCCAGUGAAUUAUAGCGGAGCGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947420.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |||||*||||||||||||||||*| targets:311   GAGUCACUCCGCUAUAAUUCACCG   334 Target Full Sequence	2.5	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
EZ091933.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |||*||||||||||||||||||** targets:56   GAGCCGCUCCGCUAUAAUUCACCC   79 Target Full Sequence	2.5	TSA: Zea mays contig27582, mRNA sequence	NA	coding protein	psRNATarget
EZ112673.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |*||||||||||||||||||||** targets:45   GUGUCGCUCCGCUAUAAUUCACCA   68 Target Full Sequence	2.5	TSA: Zea mays contig48334, mRNA sequence	NA	coding protein	psRNATarget
JB170471.1	ncRNA:24   CUC---AGCGAGGCGAUAUUAAGUGAC   1   |=|---|||||||||||||||||||** targets:82   GGGAAUUCGCUCCGCUAUAAUUCACCA   108 Target Full Sequence	2.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:24   CUC---AGCGAGGCGAUAUUAAGUGAC   1   |=|---|||||||||||||||||||** targets:82   GGGAAUUCGCUCCGCUAUAAUUCACCA   108 Target Full Sequence	2.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
HI410010.1	ncRNA:24   CUC---AGCGAGGCGAUAUUAAGUGAC   1   |=|---|||||||||||||||||||** targets:82   GGGAAUUCGCUCCGCUAUAAUUCACCA   108 Target Full Sequence	2.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   *||*||||||||||||||||||*| targets:468   AAGGCGCUCCGCUAUAAUUCACCG   491 Target Full Sequence	1.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |||*|*||||||||||||||||*| targets:582   GAGGCACUCCGCUAUAAUUCACCG   605 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   *=|*=|||||||||||||||||*| targets:688   CGGCUGCUCCGCUAUAAUUCACCG   711 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |||*|*||||||||||||||||*| targets:582   GAGGCACUCCGCUAUAAUUCACCG   605 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   *=|*=|||||||||||||||||*| targets:688   CGGCUGCUCCGCUAUAAUUCACCG   711 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT064671.1	ncRNA:24   CUCAGCGAGGCGAUAUUAAGUGAC   1   |||*|*||||||||||||||||*| targets:1072   GAGCCACUCCGCUAUAAUUCACCG   1095 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   CUCA-GCGAGGCGAUAUUAAGUGAC   1   |=|*-||||||||||||||||||*| targets:832   GGGCGCGCUCCGCUAUAAUUCACCG   856 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   CUCA-GCGAGGCGAUAUUAAGUGAC   1   |=|*-||||||||||||||||||*| targets:840   GGGCGCGCUCCGCUAUAAUUCACCG   864 Target Full Sequence	1.5	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget