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BaseInfo

ncRNA ID	novel_zma_miR13153
Species	Zea mays
Class	miRNA
Genome position	Chr9:9823729-9823782 [+]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	31 - GCUCUCUGCACAGGGGCGGAUGGU - 54
Stem-loop(if miRNA)	--G      GG   G    -   -    A    GUCCGU  CCU GUGC GAG GCAC U    ||||||  ||| |||| ||| ||||    UAGGCG  GGG CACG CUC CGUG C UGG      --   A    U   U    G
Stem-loop sequence	GGUCCGUGGCCUGGUGCGAGGCACAUCGGUGCUCUCUGCACAGGGGCGGAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067064.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||||||||||||||=|| targets:36   ACCGUCCGCCCCUGUGCAGAGGGC   59 Target Full Sequence	1.5	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||||||||||||||=|| targets:1348   ACCGUCCGCCCCUGUGCAGAGGGC   1371 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   ||*=||||||||||*||||||||= targets:1276   ACAGUCCGCCCCUGCGCAGAGAGU   1299 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||||||||||||||=|| targets:1348   ACCGUCCGCCCCUGUGCAGAGGGC   1371 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   ||*=||||||||||*||||||||= targets:1276   ACAGUCCGCCCCUGCGCAGAGAGU   1299 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
EU948904.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=||||||||||||*||||||| targets:528   ACCGUCCGCCCCUGUGAAGAGAGC   551 Target Full Sequence	1.5	Zea mays clone 389441 mRNA sequence	NA	coding protein	psRNATarget
EU949034.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=||||||||||||*||||||| targets:529   ACCGUCCGCCCCUGUGAAGAGAGC   552 Target Full Sequence	1.5	Zea mays clone 394358 mRNA sequence	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   ||*=||||||||||*||||||||= targets:2719   ACAGUCCGCCCCUGCGCAGAGAGU   2742 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||*||||||||||||*| targets:48   ACCGUCCGCGCCUGUGCAGAGAUC   71 Target Full Sequence	2.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||*||||||||||||*| targets:48   ACCGUCCGCGCCUGUGCAGAGAUC   71 Target Full Sequence	2.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   UGGUAGGCGGGGACACGUCUCUCG   1   |||=|||||*||||||||||||*| targets:48   ACCGUCCGCGCCUGUGCAGAGAUC   71 Target Full Sequence	2.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget