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BaseInfo

ncRNA ID novel_zma_miR13128
Species Zea mays
Class miRNA
Genome position Chr8:163896112-163896260 [+]
Reference genome RefGen_v4
Source SRR5451004;SRR5451005
Length 24
Mature sequence(if miRNA) 1 - UUGAAAUUGGGAAGAGGGAGCGGA - 24
Stem-loop(if miRNA) --                                               A   U        -   U    UUUUU
  UUGAAAUUGGGAAGAGGGAGCGGAUCAGGAAGAGAAAAGAGAGUAAC CCC GAAUUUGG GGG AGAA     U
  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||
  AACUUUAACCCUUCUCCCUCGUCUAGUCCUUCUCUUUUCUCUCAUUG GGG CUUAAACC CUC UCUU     C
CA                                               C   -        A   -    UUCUU
Stem-loop sequence UUGAAAUUGGGAAGAGGGAGCGGAUCAGGAAGAGAAAAGAGAGUAACACCCUGAAUUUGGGGGUAGAAUUUUUUCUUCUUUUCUCUCACCAAAUUCGGGCGUUACUCUCUUUUCUCUUCCUGAUCUGCUCCCUCUUCCCAAUUUCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948499.1
ncRNA:24   AGGCGAGGGAGAAGGGUUAAAGUU   1
  |==|||||||||||||||||||||
targets:555   UUUGCUCCCUCUUCCCAAUUUCAA   578

0.0 Zea mays clone 378997 mRNA sequence NA coding protein psRNATarget
BT038105.1
ncRNA:24   AGGCGAGGGAGAAGGGUUAAAGUU   1
  |==|||||=|||*|||||||||||
targets:1174   UUUGCUCCUUCUCCCCAAUUUCAA   1197

2.5 Zea mays full-length cDNA clone ZM_BFb0212B12 mRNA, complete cds NA coding protein psRNATarget