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BaseInfo

ncRNA ID	novel_zma_miR13127
Species	Zea mays
Class	miRNA
Genome position	Chr8:145719852-145719945 [+]
Reference genome	RefGen_v4
Source	SRR5451004
Length	22
Mature sequence(if miRNA)	1 - AGCCUCGGGCGAGUCGAAGGUG - 22
Stem-loop(if miRNA)	--            GUCGA     C   CG    UUGAGGAGACCCUCGG   AGCCUCGGGCGA     AGGUG GCC  UUGC                G   ||||||||||||     ||||| |||  ||||                C   UCGGAGCCCGUU     UCUAU CGG  UGGG                G GG            -----     -   -C    UCCUCCUAAGUGCAGA
Stem-loop sequence	AGCCUCGGGCGAGUCGAAGGUGCGCCCGUUGCUUGAGGAGACCCUCGGGCGAGACGUGAAUCCUCCUGGGUCGGCUAUCUUUGCCCGAGGCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541001.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   ||||||||=||||||||||||* targets:4866   CACCUUCGGCUCGCCCGAGGCC   4887 Target Full Sequence	2.0	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget
EU940901.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   *||||||||||||||||||||* targets:472   GACCUUCGACUCGCCCGAGGCC   493 Target Full Sequence	1.0	Zea mays clone 1168199 mRNA sequence	NA	coding protein	psRNATarget
JX469952.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:105   CACCUUCGACUCGGCCGAGGCC   126 Target Full Sequence	2.5	Zea mays subsp. mays clone UT3214 AP2-EREBP-type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
NM_001152568.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:245   CACCUUCGACUCGGCCGAGGCC   266 Target Full Sequence	2.5	Zea mays putative AP2/EREBP transcription factor superfamily protein (LOC100279571), mRNA	NA	coding protein	psRNATarget
BT054474.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:245   CACCUUCGACUCGGCCGAGGCC   266 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0081A23 mRNA, complete cds	NA	coding protein	psRNATarget
EU947096.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:242   CACCUUCGACUCGGCCGAGGCC   263 Target Full Sequence	2.5	Zea mays clone 326992 mRNA sequence	NA	coding protein	psRNATarget
NM_001156700.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:332   CACCUUCGACUCGGCCGAGGCC   353 Target Full Sequence	2.5	Zea mays ethylene-responsive transcription factor 3 (EREB98), mRNA	NA	coding protein	psRNATarget
EU966001.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||||||||*|||||||* targets:332   CACCUUCGACUCGGCCGAGGCC   353 Target Full Sequence	2.5	Zea mays clone 290693 ethylene-responsive transcription factor 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   ||||*||||||||||||||||* targets:114   CACCCUCGACUCGCCCGAGGCC   135 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   ||||*||||||||||||||||* targets:119   CACCCUCGACUCGCCCGAGGCC   140 Target Full Sequence	2.0	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
EU940899.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||*=||||||||||||* targets:772   CACCUUCAGCUCGCCCGAGGCC   793 Target Full Sequence	3.0	Zea mays clone 1168123 mRNA sequence	NA	coding protein	psRNATarget
XM_020541624.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   |||||||*=||||||||||||* targets:766   CACCUUCAGCUCGCCCGAGGCC   787 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103644648 (LOC103644648), mRNA	NA	coding protein	psRNATarget
EZ069129.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   ||=||*||=||||||||||||* targets:84   CAUCUCCGGCUCGCCCGAGGCC   105 Target Full Sequence	3.0	TSA: Zea mays contig04764, mRNA sequence	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:22   GUGGAAGCUGAGCGGGCUCCGA   1   ||*=|*|||||||||||||||* targets:916   CAGUUACGACUCGCCCGAGGCC   937 Target Full Sequence	3.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget