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BaseInfo

ncRNA ID novel_zma_miR13115
Species Zea mays
Class miRNA
Genome position Chr10:96407845-96407909 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 24
Mature sequence(if miRNA) 1 - GUCUAAGAAGACGACUAGAAUGAG - 24
Stem-loop(if miRNA) --  C     A     C  G    -A   UG A
  GU UAAGA GACGA UA AAUG  GCA  C U
  || ||||| ||||| || ||||  |||  | C
  CG GUUCU CUGUU AU UUAC  UGU  G A
CA  U     -     A  A    GC   UA U
Stem-loop sequence GUCUAAGAAGACGACUAGAAUGAGCAUGCAUCAUGAUUGUCGCAUUAUAAUUGUCUCUUGUGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661246.2
ncRNA:24   GAGU----AAGAUCAGCAGAAGAAUCUG   1
  =|||----|||*||||||||||||=|||
targets:64   UUCAAGAGUUCAAGUCGUCUUCUUGGAC   91

2.5 PREDICTED: Zea mays C2 and GRAM domain-containing protein (LOC103638293), transcript variant X1, mRNA NA coding protein psRNATarget