Search result

BaseInfo

ncRNA ID	novel_zma_miR13109
Species	Zea mays
Class	miRNA
Genome position	Chr7:52400264-52400351 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	21
Mature sequence(if miRNA)	68 - GUGAGCUGCGACGCAGGGGCA - 88
Stem-loop(if miRNA)	--       G G  G  --     ----AG GGGGAGGAGGCGUGGAU   GUGAGCU C AC CA  GGGGC      C                 C   ||||||| | || ||  |||||      |   CGCUCGA G UG GU  CCCCG      U                 G GU       - -  G  AC     GGGGGA GUAGCGGCCGGAACCAG
Stem-loop sequence	GUGAGCUGCGACGCAGGGGCAGCGGGGAGGAGGCGUGGAUCGGACCAAGGCCGGCGAUGUAGGGGGGCCCCCAUGGGUGAGCUCGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545410.1	ncRNA:21   ACGGGGACGCAGCGUCGAGUG   1   |||||*|||||||||||||*| targets:548   UGCCCAUGCGUCGCAGCUCCC   568 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942857), mRNA	NA	coding protein	psRNATarget
XM_020543256.1	ncRNA:21   ACGGGGACGCAGCGUCGAGUG   1   |||||*|||||||||||||*| targets:728   UGCCCAUGCGUCGCAGCUCCC   748 Target Full Sequence	2.5	PREDICTED: Zea mays ESX-1 secretion-associated protein EspK-like (LOC109941965), mRNA	NA	coding protein	psRNATarget
EU967957.1	ncRNA:21   ACGGGGACGCAGCGUCGAGUG   1   **||||||||*|||||||||* targets:132   CCCCCCUGCGCCGCAGCUCAA   152 Target Full Sequence	2.5	Zea mays clone 311918 prenylated Rab receptor 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153719.1	ncRNA:21   ACGGGGACGCAGCGUCGAGUG   1   **||||||||*|||||||||* targets:201   CCCCCCUGCGCCGCAGCUCAA   221 Target Full Sequence	2.5	Zea mays prenylated Rab receptor 2 (LOC100280799), mRNA	NA	coding protein	psRNATarget
EU953879.1	ncRNA:21   ACGGGGACGCAGCGUCGAGUG   1   **||||||||*|||||||||* targets:201   CCCCCCUGCGCCGCAGCUCAA   221 Target Full Sequence	2.5	Zea mays clone 1448360 prenylated Rab receptor 2 mRNA, complete cds	NA	coding protein	psRNATarget