Search result

BaseInfo

ncRNA ID	novel_zma_miR13077
Species	Zea mays
Class	miRNA
Genome position	Chr6:95081399-95081471 [-]
Reference genome	RefGen_v4
Source	SRR5451004;SRR5451005
Length	22
Mature sequence(if miRNA)	1 - CGCGCGGCGGUGGAAGAAGCGU - 22
Stem-loop(if miRNA)	GU   CGA           -   -----------     GUU   CGU   UUCCGCCGCCG GCG           GGCGG   G   |||   ||||||||||| |||           |||||   GCG   AAGGUGGCGGC CGC           CCGCC   U -U   AAG           G   UGAUGCUGUUA     GGC
Stem-loop sequence	GUCGUCGAUUCCGCCGCCGGCGGGCGGGUUGUCGGCCGCCAUUGUCGUAGUCGCGCGGCGGUGGAAGAAGCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073629.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   ==|=|||||||||*|||||||| targets:7   GUGUUUCUUCCACGGCCGCGCG   28 Target Full Sequence	2.5	TSA: Zea mays contig09266, mRNA sequence	NA	coding protein	psRNATarget
NM_001149543.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   ==|=|||||||||*|||||||| targets:339   GUGUUUCUUCCACGGCCGCGCG   360 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275479 (LOC100275479), mRNA	NA	coding protein	psRNATarget
EU956192.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   ==|=|||||||||*|||||||| targets:339   GUGUUUCUUCCACGGCCGCGCG   360 Target Full Sequence	2.5	Zea mays clone 1558776 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158533.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   *|||**|||||||||||||||| targets:346   CCGCAGCUUCCACCGCCGCGCG   367 Target Full Sequence	2.0	Zea mays ZF-HD homeobox protein (LOC100285642), mRNA	NA	coding protein	psRNATarget
EU973235.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   *|||**|||||||||||||||| targets:346   CCGCAGCUUCCACCGCCGCGCG   367 Target Full Sequence	2.0	Zea mays clone 395249 ZF-HD homeobox protein mRNA, complete cds	NA	coding protein	psRNATarget
EU946822.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   *=|||*|||||*|||||||||| targets:255   CUGCUGCUUCCUCCGCCGCGCG   276 Target Full Sequence	2.5	Zea mays clone 323882 mRNA sequence	NA	coding protein	psRNATarget
EZ077234.1	ncRNA:22   UGCGAAGAAGGUGGCGGCGCGC   1   *|||*||*|||||||||||||* targets:86   CCGCGUCGUCCACCGCCGCGCA   107 Target Full Sequence	3.0	TSA: Zea mays contig12871, mRNA sequence	NA	coding protein	psRNATarget