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BaseInfo

ncRNA ID novel_zma_miR13074
Species Zea mays
Class miRNA
Genome position Chr6:113667033-113667102 [-]
Reference genome RefGen_v4
Source SRR5451004
Length 24
Mature sequence(if miRNA) 47 - GAUAGAUCAGAAAGAGGCCAGAGG - 70
Stem-loop(if miRNA) -------      UCA    G G  CA    CC  ACCC
       GAUAGA   GAAA A GC  GAGG  CA    U
       ||||||   |||| | ||  ||||  ||    A
       CUGUCU   CUUU U UG  CUCU  GU    U
AUUUGUG      --C    G G  --    AU  CCUA
Stem-loop sequence GAUAGAUCAGAAAGAGGCCAGAGGCCCAACCCUAUAUCCUGUAUCUCGUGUGUUUCCUCUGUCGUGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU952095.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  ||||||||||||||||||||||||
targets:1658   CCUCUGGCCUCUUUCUGAUCUAUC   1681

0.0 Zea mays clone 1164250 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU943108.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  *=|||||**||||||||||||||*
targets:129   GUUCUGGAAUCUUUCUGAUCUAUG   152

3.0 Zea mays clone 1562172 mRNA sequence NA coding protein psRNATarget
NM_001177081.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  *=|||||**||||||||||||||*
targets:964   GUUCUGGAAUCUUUCUGAUCUAUG   987

3.0 Zea mays uncharacterized LOC100282169 (si496017h02), mRNA NA coding protein psRNATarget
BT083671.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  *=|||||**||||||||||||||*
targets:964   GUUCUGGAAUCUUUCUGAUCUAUG   987

3.0 Zea mays full-length cDNA clone ZM_BFb0027A21 mRNA, complete cds NA coding protein psRNATarget
EU959887.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  *=|||||**||||||||||||||*
targets:961   GUUCUGGAAUCUUUCUGAUCUAUG   984

3.0 Zea mays clone 220266 F-box domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_020553345.1
ncRNA:24   GGAGACCGGAGAAAGACUAGAUAG   1
  *=|||||**||||||||||||||*
targets:999   GUUCUGGAAUCUUUCUGAUCUAUG   1022

3.0 PREDICTED: Zea mays uncharacterized LOC100282169 (si496017h02), transcript variant X1, mRNA NA coding protein psRNATarget