Search result

BaseInfo

ncRNA ID novel_zma_miR13073
Species Zea mays
Class miRNA
Genome position Chr6:2199712-2199770 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 22
Mature sequence(if miRNA) 38 - UGGUGGACUCGUCAAGGGCGGA - 59
Stem-loop(if miRNA) --U    --   A   CUAGCAAGCGCCUCG
   GCUC  GGC GCU               G
   ||||  ||| |||
   CGGG  CUG CUC               C
AGG    AA   -   AGGUGGUUCCGCGAG
Stem-loop sequence UGCUCGGCAGCUCUAGCAAGCGCCUCGGCGAGCGCCUUGGUGGACUCGUCAAGGGCGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT062344.1
ncRNA:22   AGGCGGGAACUGCUCAGGUGGU   1
  **=|=||||||||||||||||*
targets:455   CAUGUCCUUGACGAGUCCACCU   476

2.0 Zea mays full-length cDNA clone ZM_BFb0283M11 mRNA, complete cds NA coding protein psRNATarget
NM_001158986.1
ncRNA:22   AGGCGGGAACUGCUCAGGUGGU   1
  **=|=||||||||||||||||*
targets:1256   CAUGUCCUUGACGAGUCCACCU   1277

2.0 Zea mays phosphoribosylanthranilate transferase (LOC100286098), mRNA NA coding protein psRNATarget
EU975608.1
ncRNA:22   AGGCGGGAACUGCUCAGGUGGU   1
  **=|=||||||||||||||||*
targets:1256   CAUGUCCUUGACGAGUCCACCU   1277

2.0 Zea mays clone 494252 phosphoribosylanthranilate transferase mRNA, complete cds NA coding protein psRNATarget
BT084834.1
ncRNA:21   GGCGGGAACUGCUCAGGUGGU   1
  *=|==|||||||||||||||*
targets:1   AUGUUCUUGACGAGUCCACCU   21

3.0 Zea mays full-length cDNA clone ZM_BFb0189N05 mRNA, complete cds NA coding protein psRNATarget
NM_001196010.1
ncRNA:21   GGCGGGAACUGCUCAGGUGGU   1
  *=|==|||||||||||||||*
targets:1   AUGUUCUUGACGAGUCCACCU   21

3.0 Zea mays uncharacterized LOC100501234 (LOC100501234), mRNA NA coding protein psRNATarget