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BaseInfo

ncRNA ID novel_zma_miR13047
Species Zea mays
Class miRNA
Genome position Chr5:31425574-31425679 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 24
Mature sequence(if miRNA) 1 - AAAUAGGAUGUUUCCACUGACGGU - 24
Stem-loop(if miRNA) --                   A     AA  UAAGA                U
  AAAUAGGAUGUUUCCACUG CGGUU  GU     UAACCGCCAGUGGAAA C
  ||||||||||||||||||| |||||  ||     ||||||||||||||||
  UUUAUCCUACAAAGGUGAC GCCAA  CA     GUUGGCGGUCACUUUU A
CC                   C     CA  UUGUG                A
Stem-loop sequence AAAUAGGAUGUUUCCACUGACGGUUAAGUUAAGAUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:24   UGGCAGUCACCUUUGUAGGAUAAA   1
  ||||*|||||||||=|||||||||
targets:82   ACCGCCAGUGGAAAUAUCCUAUUU   105

1.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget