ncRNA ID | novel_zma_miR13020 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr4:44255689-44255804 [+] |
Reference genome | RefGen_v4 |
Source | SRR5451004 |
Length | 22 |
Mature sequence(if miRNA) | 1 - CUGAUCUGGAUAUGAAUCGGUU - 22 |
Stem-loop(if miRNA) |
--        GA  U       UUCAAAGAU  CAG     -CUGUC      UG  CU CCU   CUGAUCUG  UA GAAUCGG         GC   UCUUC      AGCCGU  AG  C   U   ||||||||  || |||||||         ||   |||||      ||||||  ||  |   GAUUAGGC  AU UUUAGCU         CG   AGAAG      UCGGCG  UC  G   C UC        UC  -       --------U  AUA     CCUACC      GU  AU UUU |
Stem-loop sequence | CUGAUCUGGAUAUGAAUCGGUUCAAAGAUGCCAGUCUUCCUGUCAGCCGUUGAGCUCCCUUCUUUGUACUUGGCGGCUCCAUCCGAAGAAUAGCUUCGAUUUUACUCGGAUUAGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ061438.1 |
|
1.0 | TSA: Zea mays contig62560, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
AF049112.1 |
|
3.0 | Zea mays retrotransposon Cinful prpol mRNA, partial cds | NA | coding protein | psRNATarget |