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BaseInfo

ncRNA ID novel_zma_miR13020
Species Zea mays
Class miRNA
Genome position Chr4:44255689-44255804 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 22
Mature sequence(if miRNA) 1 - CUGAUCUGGAUAUGAAUCGGUU - 22
Stem-loop(if miRNA) --        GA  U       UUCAAAGAU  CAG     -CUGUC      UG  CU CCU
  CUGAUCUG  UA GAAUCGG         GC   UCUUC      AGCCGU  AG  C   U
  ||||||||  || |||||||         ||   |||||      ||||||  ||  |
  GAUUAGGC  AU UUUAGCU         CG   AGAAG      UCGGCG  UC  G   C
UC        UC  -       --------U  AUA     CCUACC      GU  AU UUU
Stem-loop sequence CUGAUCUGGAUAUGAAUCGGUUCAAAGAUGCCAGUCUUCCUGUCAGCCGUUGAGCUCCCUUCUUUGUACUUGGCGGCUCCAUCCGAAGAAUAGCUUCGAUUUUACUCGGAUUAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ061438.1
ncRNA:22   UUGGCUAAGUAUAGGUCUAGUC   1
  ||=*||||||||||||||||||
targets:38   AAUAGAUUCAUAUCCAGAUCAG   59

1.0 TSA: Zea mays contig62560, mRNA sequence NA coding protein psRNATarget
AF049112.1
ncRNA:22   UUGGCUAAGUAUAGGUCUAGUC   1
  |||*||||=||||||||||||*
targets:523   AACAGAUUUAUAUCCAGAUCAC   544

3.0 Zea mays retrotransposon Cinful prpol mRNA, partial cds NA coding protein psRNATarget