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BaseInfo

ncRNA ID	novel_zma_miR13008
Species	Zea mays
Class	miRNA
Genome position	Chr2:131024472-131024597 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	103 - AAGGACUGAUUUGGUGAUUAGGGA - 126
Stem-loop(if miRNA)	--A   AC             A           AGUAUCCAUA            C     A     A    AGG  UGAUUUGGUGAUU GGGAUCCCAAG          GGGGAGGAAUCC CUUGC AUUUA U    |||  ||||||||||||| |||||||||||          |||||||||||| ||||| |||||    UCC  ACUAAACCACUAG CCCUAGGGUUC          CCCUUCUUUAGG GGACG UAAAU U UAA   CA             G           ----------            A     A     U
Stem-loop sequence	AAGGACUGAUUUGGUGAUUAGGGAUCCCAAGAGUAUCCAUAGGGGAGGAAUCCCCUUGCAAUUUAAUUUUAAAUAGCAGGAGGAUUUCUUCCCCUUGGGAUCCCGGAUCACCAAAUCAACCCUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552825.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   |||||||||||||||||||||||| targets:4776   UCCCUAAUCACCAAAUCAGUCCUU   4799 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   |||||||||||||||||||||||| targets:4685   UCCCUAAUCACCAAAUCAGUCCUU   4708 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   |||||||||||||||||||||||| targets:4511   UCCCUAAUCACCAAAUCAGUCCUU   4534 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   ||||||*||||||||||||||||| targets:455   UCCCUAUUCACCAAAUCAGUCCUU   478 Target Full Sequence	1.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   |||||=|||||||||||||*|||| targets:2   UCCCUGAUCACCAAAUCAGACCUU   25 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   ||||*==||||||||||||||||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   ||||*==||||||||||||||||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   ||||*==||||||||||||||||| targets:160   UCCCCGGUCACCAAAUCAGUCCUU   183 Target Full Sequence	2.0	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   |==||==||||||||||||||||* targets:70   UUUCUGGUCACCAAAUCAGUCCUA   93 Target Full Sequence	3.0	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
NM_001346674.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   *||=||||||||||||||*||||* targets:341   ACCUUAAUCACCAAAUCAAUCCUA   364 Target Full Sequence	2.5	Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA	NA	coding protein	psRNATarget
NM_001328562.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCAGGAA   1   *||=||||||||||||||*||||* targets:338   ACCUUAAUCACCAAAUCAAUCCUA   361 Target Full Sequence	2.5	Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA	NA	coding protein	psRNATarget