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BaseInfo

ncRNA ID novel_zma_miR12999
Species Zea mays
Class miRNA
Genome position Chr4:150822176-150822221 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 22
Mature sequence(if miRNA) 25 - UCAACGGGGAGUAGGUUUGCAU - 46
Stem-loop(if miRNA) --A      ---C   CUUUGUGA
   CAGACC    GGU        C
   ||||||    |||        C
   GUUUGG    GGG        A
UAC      AUGA   GCAACUCC
Stem-loop sequence ACAGACCCGGUCUUUGUGACCACCUCAACGGGGAGUAGGUUUGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT083610.2
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  *|||||||||||||||||||||
targets:32   UUGCAAACCUACUCCCCGUUGA   53

0.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT084659.2
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  *|||||||||||||||||||||
targets:1191   UUGCAAACCUACUCCCCGUUGA   1212

0.0 Zea mays full-length cDNA clone ZM_BFb0153H03 mRNA, complete cds NA coding protein psRNATarget
EZ056532.1
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  **||||||||||||||||||||
targets:54   UCGCAAACCUACUCCCCGUUGA   75

0.0 TSA: Zea mays contig57654, mRNA sequence NA coding protein psRNATarget
EU948909.1
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  **||||||||||||||||||||
targets:267   UCGCAAACCUACUCCCCGUUGA   288

0.0 Zea mays clone 389567 mRNA sequence NA coding protein psRNATarget
EZ059946.1
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  ***|||||||||||||||||||
targets:35   UCUCAAACCUACUCCCCGUUGA   56

0.0 TSA: Zea mays contig61068, mRNA sequence NA coding protein psRNATarget
NM_001174977.1
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  *||=|||||||*||||||||||
targets:974   UUGUAAACCUAAUCCCCGUUGA   995

2.5 Zea mays uncharacterized LOC100382221 (LOC100382221), mRNA NA coding protein psRNATarget
BT063569.1
ncRNA:22   UACGUUUGGAUGAGGGGCAACU   1
  *||=|||||||*||||||||||
targets:974   UUGUAAACCUAAUCCCCGUUGA   995

2.5 Zea mays full-length cDNA clone ZM_BFc0078N20 mRNA, complete cds NA coding protein psRNATarget
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