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BaseInfo

ncRNA ID novel_zma_miR12995
Species Zea mays
Class miRNA
Genome position Chr4:125280169-125280231 [+]
Reference genome RefGen_v4
Source SRR5451004
Length 22
Mature sequence(if miRNA) 1 - CCCAAAACUUUGUCGUCGGGUA - 22
Stem-loop(if miRNA) --     AA     UC    -  -UA    GGC
  CCCAA  CUUUG  GUCG GG   CGCU   C
  |||||  |||||  |||| ||   ||||   U
  GGGUU  GAAAC  CAGU CC   GCGA   C
UC     CG     --    U  UUA    AAU
Stem-loop sequence CCCAAAACUUUGUCGUCGGGUACGCUGGCCUCUAAAGCGAUUCCUUGACCAAAGGCUUGGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409794.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  |*||||*||||*||||||||||
targets:3   UUCCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 7919 from Patent EP2074227 NA coding protein psRNATarget
JB170255.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  |*||||*||||*||||||||||
targets:3   UUCCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 7919 from Patent EP2559767 NA coding protein psRNATarget
LQ241924.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  |*||||*||||*||||||||||
targets:3   UUCCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 7919 from Patent EP2985353 NA coding protein psRNATarget
HI408642.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  **=|||*||||*||||||||||
targets:3   GUUCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 6767 from Patent EP2074227 NA coding protein psRNATarget
JB169103.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  **=|||*||||*||||||||||
targets:3   GUUCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 6767 from Patent EP2559767 NA coding protein psRNATarget
LQ240772.1
ncRNA:22   AUGGGCUGCUGUUUCAAAACCC   1
  **=|||*||||*||||||||||
targets:3   GUUCCGCCGACCAAGUUUUGGG   24

2.5 Sequence 6767 from Patent EP2985353 NA coding protein psRNATarget