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BaseInfo

ncRNA ID	novel_zma_miR12981
Species	Zea mays
Class	miRNA
Genome position	Chr3:40081089-40081211 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	100 - GUUCGGUUAGAAGUGGAUUGAGGG - 123
Stem-loop(if miRNA)	--        A  A U  A        -   -AAAA A    U     C       ACAAAUC   GUUCGGUU GA G GG UUGAGGGG AUU     G GAUU AAUCC CUUCUAU       U   |||||||| || | || |||||||| |||     | |||| ||||| |||||||   CAAGCCAA CU C CC AAUUCCCC UAA     C CUAA UUAGG GAGGAUA       A UA        A  C U  A        A   CCUCG -    U     A       AAUCUAA
Stem-loop sequence	GUUCGGUUAGAAGUGGAUUGAGGGGAUUAAAAGAGAUUUAAUCCCCUUCUAUACAAAUCUAAAUCUAAAUAGGAGAGGAUUUAAUCCGCUCCAAUACCCCUUAAACCUCCUCAAACCGAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |==||=|||||||||||||||||| targets:456   CUUUCGAUCCACUUCUAACCGAAC   479 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106534.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   ===||||||||=|||||||||||| targets:137   UUUUCAAUCCAUUUCUAACCGAAC   160 Target Full Sequence	1.5	TSA: Zea mays contig42192, mRNA sequence	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |=||||||||||*||||||||||| targets:152   CUCUCAAUCCACCUCUAACCGAAC   175 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
BT018211.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |=|||||*||||||*||||||||| targets:502   CUCUCAAACCACUUAUAACCGAAC   525 Target Full Sequence	2.5	Zea mays clone EL01N0560G03.c mRNA sequence	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |==|=|||||*|||*||||||||| targets:1627   CUUUUAAUCCCCUUGUAACCGAAC   1650 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT055781.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |==|=|||||*|||*||||||||| targets:1627   CUUUUAAUCCCCUUGUAACCGAAC   1650 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
BT061569.1	ncRNA:24   GGGAGUUAGGUGAAGAUUGGCUUG   1   |==|=|||||*|||*||||||||| targets:1816   CUUUUAAUCCCCUUGUAACCGAAC   1839 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget