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BaseInfo

ncRNA ID	novel_zma_miR12980
Species	Zea mays
Class	miRNA
Genome position	Chr3:43856058-43856107 [+]
Reference genome	RefGen_v4
Source	SRR5451004;SRR5451005
Length	24
Mature sequence(if miRNA)	27 - ACCGGACUGUCUGGUGGGUGGCAC - 50
Stem-loop(if miRNA)	--A    G        U       G    CCAU CACCAGAC GUCCGGU C    |||| |||||||| |||||||    GGUG GUGGUCUG CAGGCCA A CAC    G        U       C
Stem-loop sequence	ACCAUGCACCAGACUGUCCGGUGCACACCGGACUGUCUGGUGGGUGGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ101438.1	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   ||||-||*|||||||||||||||| targets:37   GUGC-ACGCACCAGACAGUCCGGU   59 Target Full Sequence	1.0	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   |||--=||||||=||||||||||| targets:31   GUG--GCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   |||--=||||||=||||||||||| targets:31   GUG--GCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   |||--=||||||=||||||||||| targets:31   GUG--GCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   |||--||=||||=||||||||||| targets:26   GUG--ACUCACCGGACAGUCCGGU   47 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CACGGUGGGUGGUCUGUCAGGCCA   1   |||--|*|||||=||||||||||| targets:649   GUG--AACCACCGGACAGUCCGGU   670 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget