Search result

BaseInfo

ncRNA ID novel_zma_miR12973
Species Zea mays
Class miRNA
Genome position Chr3:146484819-146484866 [-]
Reference genome RefGen_v4
Source SRR5451004
Length 22
Mature sequence(if miRNA) 1 - AAUUCAUAAGUAGAGAUUGUUC - 22
Stem-loop(if miRNA) --         -    A CU    C
  GCAAUCUCU UUUA G  AUUU A
  ||||||||| |||| |  ||||
  UGUUAGAGA GAAU C  UAAA U
CU         U    A -U    G
Stem-loop sequence GCAAUCUCUUUUAAGCUAUUUCAUGAAAUUCAUAAGUAGAGAUUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940875.1
ncRNA:22   CU--UGUUAGAGAUGAAUACUUAA   1
  ||--||||||||||||||||||||
targets:1212   GAGCACAAUCUCUACUUAUGAAUU   1235

0.0 Zea mays clone 1165618 mRNA sequence NA coding protein psRNATarget
XM_020552533.1
ncRNA:22   CUUGUUAGAGAUGAAUACUUAA   1
  |*=||||*|=||||||||||||
targets:3589   GUGCAAUGUUUACUUAUGAAUU   3610

2.5 PREDICTED: Zea mays uncharacterized LOC103655263 (LOC103655263), transcript variant X1, mRNA NA coding protein psRNATarget