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BaseInfo

ncRNA ID	novel_zma_miR12972
Species	Zea mays
Class	miRNA
Genome position	Chr3:170807052-170807111 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	1 - AGCUAGCUCGGCUCGACUCGUUAA - 24
Stem-loop(if miRNA)	--U      G  UA      C      AUA    AUGGGU GA  UCGAGC AGCUCG   A    |||||| ||  |||||| ||||||   U    UGCUCA CU  GGCUCG UCGAGC   C AAU      G  -C      A      AAA
Stem-loop sequence	UAUGGGUGGAUAUCGAGCCAGCUCGAUAAUCAAACGAGCUAGCUCGGCUCGACUCGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008653257.2	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   *|||||||||*||||||||||||| targets:628   AUAACGAGUCAAGCCGAGCUAGCU   651 Target Full Sequence	1.0	PREDICTED: Zea mays carbonic anhydrase (LOC100283312), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008653255.2	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   *|||||||||*||||||||||||| targets:630   AUAACGAGUCAAGCCGAGCUAGCU   653 Target Full Sequence	1.0	PREDICTED: Zea mays carbonic anhydrase (LOC100283312), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI410148.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   |*||||||*|||||||||||=||| targets:38   UAAACGAGCCGAGCCGAGCUGGCU   61 Target Full Sequence	2.5	Sequence 8273 from Patent EP2074227	NA	coding protein	psRNATarget
JB170609.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   |*||||||*|||||||||||=||| targets:38   UAAACGAGCCGAGCCGAGCUGGCU   61 Target Full Sequence	2.5	Sequence 8273 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242278.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   |*||||||*|||||||||||=||| targets:38   UAAACGAGCCGAGCCGAGCUGGCU   61 Target Full Sequence	2.5	Sequence 8273 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235391.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **||||||*|||||||||||=||| targets:46   CGAACGAGCCGAGCCGAGCUGGCU   69 Target Full Sequence	2.5	Sequence 1386 from Patent EP2985353	NA	coding protein	psRNATarget
JB163722.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **||||||*|||||||||||=||| targets:46   CGAACGAGCCGAGCCGAGCUGGCU   69 Target Full Sequence	2.5	Sequence 1386 from Patent EP2559767	NA	coding protein	psRNATarget
HI403261.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **||||||*|||||||||||=||| targets:46   CGAACGAGCCGAGCCGAGCUGGCU   69 Target Full Sequence	2.5	Sequence 1386 from Patent EP2074227	NA	coding protein	psRNATarget
EU949807.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **=*|||||||||||||||*|||| targets:793   GAGUCGAGUCGAGCCGAGCCAGCU   816 Target Full Sequence	1.5	Zea mays clone 446253 mRNA sequence	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **==||||*|||||||||||=||| targets:2975   CGGGCGAGCCGAGCCGAGCUGGCU   2998 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550142.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   *||*=|||*|||||||||||=||| targets:1974   CUACUGAGCCGAGCCGAGCUGGCU   1997 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC103649890), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174495.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **|*|||||=*||||||||||||| targets:168   CGACCGAGUUCAGCCGAGCUAGCU   191 Target Full Sequence	2.0	Zea mays putative WRKY DNA-binding domain superfamily protein (LOC100381682), mRNA	NA	coding protein	psRNATarget
BT061983.1	ncRNA:24   AAUUGCUCAGCUCGGCUCGAUCGA   1   **|*|||||=*||||||||||||| targets:168   CGACCGAGUUCAGCCGAGCUAGCU   191 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds	NA	coding protein	psRNATarget