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BaseInfo

ncRNA ID	novel_zma_miR12969
Species	Zea mays
Class	miRNA
Genome position	Chr3:196888678-196888745 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	22
Mature sequence(if miRNA)	47 - GCGGGCUGCUGGUUGGCGAUGU - 68
Stem-loop(if miRNA)	---G      G        C    UUGUGUAC    UUC     CGGGCU CUGGUUGG GAUG        CUGC   U     |||||| |||||||| ||||        ||||     GUCUGA GGCCAGCC CUGC        GGCG   G GUCA      -        -    -------C    UCA
Stem-loop sequence	GCGGGCUGCUGGUUGGCGAUGUUGUGUACCUGCUUCUGACUGCGGCCGUCCCGACCGGAGUCUGACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KM399978.1	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=||||=||*||||||||||| targets:44   CCGUCGCUAAGCAGCAGCCCGC   65 Target Full Sequence	2.5	Zea mays accelerated cell death 11 mRNA, partial cds	NA	coding protein	psRNATarget
BT042996.1	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=||||=||*||||||||||| targets:115   CCGUCGCUAAGCAGCAGCCCGC   136 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0075C08 mRNA, complete cds	NA	coding protein	psRNATarget
AY107769.1	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=||||=||*||||||||||| targets:117   CCGUCGCUAAGCAGCAGCCCGC   138 Target Full Sequence	2.5	Zea mays PCO113424 mRNA sequence	NA	coding protein	psRNATarget
XM_008678692.2	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=|||||*|||||=||||||| targets:231   CCGUCGCCCACCAGUAGCCCGC   252 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275497 (LOC100275497), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956317.1	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=|||||*|||||=||||||| targets:224   CCGUCGCCCACCAGUAGCCCGC   245 Target Full Sequence	2.5	Zea mays clone 1560705 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149558.1	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|=|||||*|||||=||||||| targets:224   CCGUCGCCCACCAGUAGCCCGC   245 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275497 (LOC100275497), mRNA	NA	coding protein	psRNATarget
XM_008658453.2	ncRNA:22   UGUAGCGGUUGGUCGUCGGGCG   1   *|*|||||=|||||||*||||| targets:231   CCUUCGCCGACCAGCAUCCCGC   252 Target Full Sequence	2.5	PREDICTED: Zea mays S-type anion channel SLAH2 (LOC103636089), transcript variant X5, mRNA	NA	coding protein	psRNATarget