Search result

BaseInfo

ncRNA ID	novel_zma_miR12950
Species	Zea mays
Class	miRNA
Genome position	Chr3:121464944-121464992 [+]
Reference genome	RefGen_v4
Source	SRR5451004;SRR1997866;SRR5451005
Length	23
Mature sequence(if miRNA)	27 - GUGGCACUCGGCAAAGAAGUCUU - 49
Stem-loop(if miRNA)	--C  A                      AC UCUUUGCCGAGUGCCACCC    || ||||||||||||||||||U    UG AGAAACGGCUCACGGUGGG UUC  A
Stem-loop sequence	CACAUCUUUGCCGAGUGCCACCCUGGGUGGCACUCGGCAAAGAAGUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962802.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   =||=||||||||||||||||||* targets:1097   GAGGCUUCUUUGCCGAGUGCCAA   1119 Target Full Sequence	1.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB167423.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   =||=|||||||||||||||||=* targets:14   GAGGCUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   =||=|||||||||||||||||=* targets:14   GAGGCUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   =||=|||||||||||||||||=* targets:14   GAGGCUUCUUUGCCGAGUGCCGA   36 Target Full Sequence	2.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167100.1	ncRNA:23   UUC---UGAAGAAACGGCUCACGGUG   1   |||---=||||||||||||||||||= targets:161   AAGCGUGCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	1.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:23   UUC---UGAAGAAACGGCUCACGGUG   1   |||---=||||||||||||||||||= targets:161   AAGCGUGCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	1.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:23   UUC---UGAAGAAACGGCUCACGGUG   1   |||---=||||||||||||||||||= targets:161   AAGCGUGCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	1.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   **|=|||||||||||||||||*= targets:49   UUGGCUUCUUUGCCGAGUGCCUU   71 Target Full Sequence	2.5	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   **|=|||||||||||||||||*= targets:1148   UUGGCUUCUUUGCCGAGUGCCUU   1170 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   **|=|||||||||||||||||*= targets:1285   UUGGCUUCUUUGCCGAGUGCCUU   1307 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   **|=|||||||||||||||||*= targets:1285   UUGGCUUCUUUGCCGAGUGCCUU   1307 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
BT055423.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   |**||||||||||||||||||** targets:140   AUAACUUCUUUGCCGAGUGCCCG   162 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   |**||||||||||||||||||** targets:140   AUAACUUCUUUGCCGAGUGCCCG   162 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   |**||||||||||||||||||** targets:2159   AUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   UUCUGAAGAAACGGCUCACGGUG   1   |**||||||||||||||||||** targets:2159   AUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget