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BaseInfo

ncRNA ID	novel_zma_miR12944
Species	Zea mays
Class	miRNA
Genome position	Chr2:2120712-2120937 [-]
Reference genome	RefGen_v4
Source	SRR5451004;SRR1997866;SRR5451005
Length	24
Mature sequence(if miRNA)	203 - ACAUAGAAGAUUGAUGCACAUGGU - 226
Stem-loop(if miRNA)	--AC           A    C                                      C               UU G  A  U     UGAG      C    AUGUGGUA     AUAGAAGAUUG UGCA AUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAU UAACGUCUCUAGUUG  U GU UA UUUGC    AACAUC UCCA        G     ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||  | || || |||||    |||||| ||||        U     UAUCUUCUAAU ACGU UACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUA AUUGCAGAGAUUAAU  A UA GU AAAUG    UUGUGG AGGU        G CGUA           C    A                                      A               -U G  A  U     UUUA      A    GGUGAUGU
Stem-loop sequence	ACAUAGAAGAUUGAUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUGUUUGGUAUAUUUUGCUGAGAACAUCCUCCAAUGUGGUAGUGUGUAGUGGUGGAAGGUGUUAUUUGUAAAUUGAAUGAUUAAUUAGAGACGUUAAAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUAUGCACUAAUCUUCUAUAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163666.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   ||||||||||*||||*|||||||| targets:45   ACCAUGUGCACCAAUAUUCUAUGU   68 Target Full Sequence	2.5	Sequence 1330 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235335.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   ||||||||||*||||*|||||||| targets:45   ACCAUGUGCACCAAUAUUCUAUGU   68 Target Full Sequence	2.5	Sequence 1330 from Patent EP2985353	NA	coding protein	psRNATarget
HI403205.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   ||||||||||*||||*|||||||| targets:45   ACCAUGUGCACCAAUAUUCUAUGU   68 Target Full Sequence	2.5	Sequence 1330 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008646350.2	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   ||||||||||*||||||||*|||| targets:1767   ACCAUGUGCACCAAUCUUCCAUGU   1790 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |=|||||*||*||||||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.0	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |=|||||*||*||||||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.0	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |=|||||*||*||||||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.0	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
EZ070596.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   **==|||||||||||||||*|||| targets:11   UGUGUGUGCAUCAAUCUUCCAUGU   34 Target Full Sequence	1.5	TSA: Zea mays contig06233, mRNA sequence	NA	coding protein	psRNATarget
HI406229.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	2.5	Sequence 4354 from Patent EP2074227	NA	coding protein	psRNATarget
JB166690.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	2.5	Sequence 4354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238359.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	2.5	Sequence 4354 from Patent EP2985353	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:1069   AGCAUGUGCACCAAUCUUCCAUGU   1092 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:1034   AGCAUGUGCACCAAUCUUCCAUGU   1057 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:1214   AGCAUGUGCACCAAUCUUCCAUGU   1237 Target Full Sequence	2.5	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:2182   AGCAUGUGCACCAAUCUUCCAUGU   2205 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   |*||||||||*||||||||*|||| targets:2191   AGCAUGUGCACCAAUCUUCCAUGU   2214 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957133.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   *|||-|*||=|||||||||||||* targets:52   UCCA-GCGCGUCAAUCUUCUAUGG   74 Target Full Sequence	3.0	Zea mays clone 1583775 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT066348.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   *|||-|*||=|||||||||||||* targets:1086   UCCA-GCGCGUCAAUCUUCUAUGG   1108 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0242E16 mRNA, complete cds	NA	coding protein	psRNATarget
BT055136.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   *|||-|*||=|||||||||||||* targets:1109   UCCA-GCGCGUCAAUCUUCUAUGG   1131 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0182L22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152877.1	ncRNA:24   UGGUACACGUAGUUAGAAGAUACA   1   *|||-|*||=|||||||||||||* targets:1109   UCCA-GCGCGUCAAUCUUCUAUGG   1131 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279927 (cl3093_1(521)), mRNA	NA	coding protein	psRNATarget