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BaseInfo

ncRNA ID	novel_zma_miR12924
Species	Zea mays
Class	miRNA
Genome position	Chr2:169709325-169709447 [-]
Reference genome	RefGen_v4
Source	SRR5451004
Length	24
Mature sequence(if miRNA)	1 - UUUGGAAUCAAACGAACAUGGCCU - 24
Stem-loop(if miRNA)	--   U         U  G    -U              A      AAAUCCCAAGUCAAAA   GCC UGUUCGUUU AU CCAA  CCAUAGGGAUUGAG GGGAUU                U   ||| ||||||||| || ||||  |||||||||||||| ||||||   CGG ACAAGCAAA UA GGUU  GGUAUCCCUAACUC CCCUAA                C UC   U         C  A    UU              C      CCUUCCCUAACCUCUC
Stem-loop sequence	GCCUUGUUCGUUUUAUGCCAAUCCAUAGGGAUUGAGAGGGAUUAAAUCCCAAGUCAAAAUCCUCUCCAAUCCCUUCCAAUCCCCCUCAAUCCCUAUGGUUUUGGAAUCAAACGAACAUGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975951.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   ||||||||||||||||||*||||| targets:26   AGGCCAUGUUCGUUUGAUCCCAAA   49 Target Full Sequence	1.5	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   ||||||||||||||||||*||||| targets:738   AGGCCAUGUUCGUUUGAUCCCAAA   761 Target Full Sequence	1.5	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664721.2	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   ||||||||||||||||||*||||| targets:3146   AGGCCAUGUUCGUUUGAUCCCAAA   3169 Target Full Sequence	1.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103641369), mRNA	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   ||||||||||||||||||*||||| targets:2521   AGGCCAUGUUCGUUUGAUCCCAAA   2544 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
EU959460.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   |||=||||||||||||||*||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	1.5	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   |||=||||||||||||||*||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	1.5	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
EU971368.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   *|||||||||||||||||*||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	1.5	Zea mays clone 363071 mitochondrial import inner membrane translocase subunit tim22 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001158128.1	ncRNA:24   UCCGGUACAAGCAAACUAAGGUUU   1   *|||||||||||||||||*||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	1.5	Zea mays mitochondrial import inner membrane translocase subunit tim22 (LOC100285234), mRNA	NA	coding protein	psRNATarget
XM_008671041.2	ncRNA:24   UCCGGUACAA--GCAAACUAAGGUUU   1   **||||||||--|||||||||||||| targets:2384   UUGCCAUGUUUACGUUUGAUUCCAAA   2409 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein At1g67900 (LOC103646313), mRNA	NA	coding protein	psRNATarget