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BaseInfo

ncRNA ID novel_zma_miR12920
Species Zea mays
Class miRNA
Genome position Chr2:2992796-2992933 [+]
Reference genome RefGen_v4
Source SRR5451004;SRR1997866
Length 24
Mature sequence(if miRNA) 1 - AUCCCUUAGGGCUGAUUUGGUGAC - 24
Stem-loop(if miRNA) --AU      -   C           -CCA          A     UA              GG    UA
    CCCUUA GGG UGAUUUGGUGA    GGGAUCACGG GGGAU  GAGGGGAUUGAGGG  AAAU  G
    |||||| ||| |||||||||||    |||||||||| |||||  ||||||||||||||  ||||
    GGGAAU CCC AUUAAACCACU    CCCUAGUGCC CCCUA  CUCCCCUAACUCCC  UUUA  U
AGUC      U   A           AUUC          C     GC              UU    UU
Stem-loop sequence AUCCCUUAGGGCUGAUUUGGUGACCAGGGAUCACGGAGGGAUUAGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUUUCCCUCAAUCCCCUCCGAUCCCCCCGUGAUCCCCUUAUCACCAAAUUAACCCUUAAGGGCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU941266.1
ncRNA:24   CAGUGGUUUAGUCGGGAUUCCCUA   1
  *|||=||||||||||||||*|||*
targets:693   AUCAUCAAAUCAGCCCUAAUGGAG   716

2.5 Zea mays clone 1435213 mRNA sequence NA coding protein psRNATarget