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BaseInfo

ncRNA ID novel_zma_miR12910
Species Zea mays
Class miRNA
Genome position Chr2:213829854-213829933 [+]
Reference genome RefGen_v4
Source SRR5451004;SRR2089700;SRR2089701;SRR2089702;SRR2089705
Length 24
Mature sequence(if miRNA) 57 - GGACCGGCGGUACUUACUCAUGGC - 80
Stem-loop(if miRNA) --  G                              GG GU
  CA GAGUAAGUACCGCCGGUCCAGGGAUUGGAC  G  G
  || ||||||||||||||||||||||||||||||  |
  GU CUCAUUCAUGGCGGCCAGGUCCCUAACCUG  C  U
CG  A                              AA AU
Stem-loop sequence CAGGAGUAAGUACCGCCGGUCCAGGGAUUGGACGGGGUGUUACAAGUCCAAUCCCUGGACCGGCGGUACUUACUCAUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539469.1
ncRNA:24   CGGUACUCAUUCAUGGCGGCCAGG   1
  ||||*|||||||||||||||||||
targets:20   GCCAGGAGUAAGUACCGCCGGUCC   43

0.0 PREDICTED: Zea mays aspartokinase 2, chloroplastic-like (LOC109940202), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539468.1
ncRNA:24   CGGUACUCAUUCAUGGCGGCCAGG   1
  ||||*|||||||||||||||||||
targets:20   GCCAGGAGUAAGUACCGCCGGUCC   43

0.0 PREDICTED: Zea mays aspartokinase 2, chloroplastic-like (LOC109940202), transcript variant X1, mRNA NA coding protein psRNATarget
BT069145.2
ncRNA:24   CGGUACUCAUUCAUGGCGGCCAGG   1
  |*||*||||||||||||||||||=
targets:1732   GGCAGGAGUAAGUACCGCCGGUCU   1755

1.0 Zea mays full-length cDNA clone ZM_BFb0212A22 mRNA, complete cds NA coding protein psRNATarget
XM_020543667.1
ncRNA:24   CGGUACUCAUUCAUGGCGGCCAGG   1
  |||=*|||||||||||*|||||||
targets:2325   GCCGGGAGUAAGUACCACCGGUCC   2348

1.5 PREDICTED: Zea mays uncharacterized LOC109942146 (LOC109942146), mRNA NA coding protein psRNATarget