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BaseInfo

ncRNA ID	novel_zma_miR12901
Species	Zea mays
Class	miRNA
Genome position	Chr2:29575042-29575108 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	1 - AACGGUCGGCUGGACCAACGGU - 22
Stem-loop(if miRNA)	--   G  C    -  A   A  -   GG      G   AAC GU GGCU GG CCA CG GUC  CCGCGC A   ||| || |||| || ||| || |||  |||||| U   UUG CA CCGA CC GGU GC CAG  GGCGCG C GG   G  A    G  -   -  A   --      U
Stem-loop sequence	AACGGUCGGCUGGACCAACGGUCGGCCGCGCGAUCUGCGCGGGACACGUGGCCGAGCCAACGGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068112.2	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:546   ACCGUUGGCCCGGCCGACCGUU   567 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:698   ACCGUUGGCCCGGCCGACCGUU   719 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:698   ACCGUUGGCCCGGCCGACCGUU   719 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:523   ACCGUUGGCCCGGCCGACCGUU   544 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:523   ACCGUUGGCCCGGCCGACCGUU   544 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:371   ACCGUUGGCCCGGCCGACCGUU   392 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   ||||||||*||=|||||||||| targets:2731   ACCGUUGGCCCGGCCGACCGUU   2752 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT035311.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   **|||||*||||||=||||||| targets:1234   UGCGUUGAUCCAGCUGACCGUU   1255 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054J09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138290.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   **|||||*||||||=||||||| targets:1234   UGCGUUGAUCCAGCUGACCGUU   1255 Target Full Sequence	2.5	Zea mays Non-structural maintenance of chromosomes element 4 homolog A (LOC100193130), mRNA	NA	coding protein	psRNATarget
EU970330.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   **|||||*||||||=||||||| targets:1285   UGCGUUGAUCCAGCUGACCGUU   1306 Target Full Sequence	2.5	Zea mays clone 343427 mRNA sequence	NA	coding protein	psRNATarget
BT068453.1	ncRNA:22   UGGCAACCAGGUCGGCUGGCAA   1   **|||||*||||||=||||||| targets:1414   UGCGUUGAUCCAGCUGACCGUU   1435 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0195E16 mRNA, complete cds	NA	coding protein	psRNATarget