Search result

BaseInfo

ncRNA ID	novel_zma_miR12897
Species	Zea mays
Class	miRNA
Genome position	Chr2:229768407-229768458 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	31 - GCGGAGGCGCGGACGGUCCACG - 52
Stem-loop(if miRNA)	G  G   -       G    ACGGA  CG AGG CGCGGAC GUCC     C  || ||| ||||||| ||||     U  GU UCC GCGCCUG CAGG     A G  G   A       G    CUAGA
Stem-loop sequence	GCGGAGGCGCGGACGGUCCACGGACUAAGAUCGGACGGUCCGCGACCUGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT039435.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||*||||||||||||||||||| targets:301   CGCGGACCGUCCGCGCCUCCGC   322 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds	NA	coding protein	psRNATarget
EU970653.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||*|*=|=|||||||||||||| targets:193   CGAGCGCUGUCCGCGCCUCCGC   214 Target Full Sequence	3.0	Zea mays clone 348492 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT039149.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||*|*=|=|||||||||||||| targets:450   CGAGCGCUGUCCGCGCCUCCGC   471 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0377E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147128.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||*|*=|=|||||||||||||| targets:450   CGAGCGCUGUCCGCGCCUCCGC   471 Target Full Sequence	3.0	Zea mays uncharacterized LOC100272671 (LOC100272671), mRNA	NA	coding protein	psRNATarget
XM_020542406.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||-||=||||||*||||||||| targets:151   CG-GGGCCGUCCUCGCCUCCGC   171 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634937 (LOC103634937), mRNA	NA	coding protein	psRNATarget
XM_020547504.1	ncRNA:22   GCACCUGGCAGGCGCGGAGGCG   1   ||*|*=|=|||||||||||||| targets:909   CGAGCGCUGUCCGCGCCUCCGC   930 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100272671 (LOC100272671), transcript variant X1, mRNA	NA	coding protein	psRNATarget