Search result

BaseInfo

ncRNA ID	novel_zma_miR12895
Species	Zea mays
Class	miRNA
Genome position	Chr2:2523742-2523795 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	23
Mature sequence(if miRNA)	32 - CGGCUCGGCUCGGCUCGGCUCGG - 54
Stem-loop(if miRNA)	--       AAA                  GGGCUGG   CGAGCCGAGCCGAGCU   |||||||   |||||||||||||||C   CUCGGCU   GCUCGGCUCGGCUCGG GG       -CG
Stem-loop sequence	GGGCUGGAAACGAGCCGAGCCGAGCUCGGCUCGGCUCGGCUCGGCUCGGCUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001352046.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *|||||||||||||||||||||| targets:134   ACGAGCCGAGCCGAGCCGAGCCG   156 Target Full Sequence	0.0	Zea mays uncharacterized LOC100191315 (LOC100191315), mRNA	NA	coding protein	psRNATarget
BT037073.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *|||||||||||||||||||||| targets:134   ACGAGCCGAGCCGAGCCGAGCCG   156 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0153M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT033371.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *|||||||||||||||||||||| targets:151   ACGAGCCGAGCCGAGCCGAGCCG   173 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0150K01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136749.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *|||||||||||||||||||||| targets:151   ACGAGCCGAGCCGAGCCGAGCCG   173 Target Full Sequence	0.0	Zea mays uncharacterized LOC100191315 (LOC100191315), mRNA	NA	coding protein	psRNATarget
EU950141.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   |||||=|||||||||||||||=| targets:650   CCGAGUCGAGCCGAGCCGAGCUG   672 Target Full Sequence	2.5	Zea mays clone 462989 mRNA sequence	NA	coding protein	psRNATarget
XM_008654936.2	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *||||=||||||||||||||||| targets:25   GCGAGUCGAGCCGAGCCGAGCCG   47 Target Full Sequence	1.0	PREDICTED: Zea mays septum-promoting GTP-binding protein 1 (LOC103633240), mRNA	NA	coding protein	psRNATarget
DQ246170.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   =|||*|||||||||||||||||| targets:549   UCGAACCGAGCCGAGCCGAGCCG   571 Target Full Sequence	1.0	Zea mays clone 10545 mRNA sequence	NA	coding protein	psRNATarget
NM_001152160.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   =|||*|||||||||||||||||| targets:553   UCGAACCGAGCCGAGCCGAGCCG   575 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279119 (LOC100279119), mRNA	NA	coding protein	psRNATarget
EU976857.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   =|||*|||||||||||||||||| targets:553   UCGAACCGAGCCGAGCCGAGCCG   575 Target Full Sequence	1.0	Zea mays clone 992015 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661582.2	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   =|||*|||||||||||||||||| targets:594   UCGAACCGAGCCGAGCCGAGCCG   616 Target Full Sequence	1.0	PREDICTED: Zea mays protein GLUTAMINE DUMPER 6 (LOC103638763), mRNA	NA	coding protein	psRNATarget
BT035788.1	ncRNA:23   GGCUCGGCUCGGCUCGGCUCGGC   1   *||||||||||||||||||||*| targets:177   ACGAGCCGAGCCGAGCCGAGCAG   199 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0083E15 mRNA, complete cds	NA	coding protein	psRNATarget
BT065753.1	ncRNA:23   GGC--UCGGCUCGGCUCGGCUCGGC   1   =||--|||||||||||||||||||* targets:10   UCGCCAGCCGAGCCGAGCCGAGCCC   34 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0066I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111936.1	ncRNA:23   GGC--UCGGCUCGGCUCGGCUCGGC   1   =||--|||||||||||||||||||* targets:68   UCGCCAGCCGAGCCGAGCCGAGCCC   92 Target Full Sequence	1.0	Zea mays glossy 8 (gl8), mRNA	NA	coding protein	psRNATarget
U89509.2	ncRNA:23   GGC--UCGGCUCGGCUCGGCUCGGC   1   =||--|||||||||||||||||||* targets:68   UCGCCAGCCGAGCCGAGCCGAGCCC   92 Target Full Sequence	1.0	Zea mays b-keto acyl reductase (glossy8) mRNA, complete cds	NA	coding protein	psRNATarget
EU969746.1	ncRNA:23   GGC--UCGGCUCGGCUCGGCUCGGC   1   =||--|||||||||||||||||||* targets:209   UCGCCAGCCGAGCCGAGCCGAGCCC   233 Target Full Sequence	1.0	Zea mays clone 335062 steroid dehydrogenase KIK-I mRNA, complete cds	NA	coding protein	psRNATarget
BT068520.2	ncRNA:23   GGC-UCGGCUCGGCUCGGCUCGGC   1   |||-=||||*|||||||||||||* targets:1305   CCGUGGCCGUGCCGAGCCGAGCCC   1328 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0283C02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346589.1	ncRNA:23   GGC-UCGGCUCGGCUCGGCUCGGC   1   |||-=||||*|||||||||||||* targets:2093   CCGUGGCCGUGCCGAGCCGAGCCC   2116 Target Full Sequence	2.0	Zea mays Electron transporter (LOC100383877), mRNA	NA	coding protein	psRNATarget