Search result

BaseInfo

ncRNA ID	novel_zma_miR12892
Species	Zea mays
Class	miRNA
Genome position	Chr2:229838763-229838917 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	1 - UCACUGGACUGUCAGGUGUGCA - 22
Stem-loop(if miRNA)	--U        -    A    UG       CU        AG  --AA  GU ---     A    A  -   GG      G    CACUGGAC UGUC GGUG  CACCGGA  GUCCGGUG  CC    CG  C   GGCCG GCCA CG GUC  CCGCGC A    |||||||| |||| ||||  |||||||  ||||||||  ||    ||  |   ||||| |||| || |||  |||||| U    GUGGCCUG ACAG CCAC  GUGGCCU  CAGGCCAC  GG    GC  G   CCGGU CGGU GC CAG  GGCGCG C CGC        U    G    GU       AU        GG  GAGG  UG CAA     C    -  A   --      U
Stem-loop sequence	UCACUGGACUGUCAGGUGUGCACCGGACUGUCCGGUGAGCCAACGGUCGGCCGAGCCAACGGUCGGCCGCGCGAUCUGCGCGGGACACGUGGCCUGGCCAACGGUCGGGAGGGGGCACCGGACUAUCCGGUGUGCACCGGACAUGUCCGGUGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068112.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:603   UGCACACCGGACAGUCCGGUGA   624 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:739   UGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:739   UGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:717   UGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:717   UGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:700   UGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:700   UGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:564   UGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:564   UGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:412   UGCACACCGGACAGUCCGGUGA   433 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   ||||||||*||||||||=|||| targets:4612   UGCACACCGGACAGUCCGGUGA   4633 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
JB169871.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   *|||||||*||||||||=|||| targets:14   GGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   *|||||||*||||||||=|||| targets:14   GGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   *|||||||*||||||||=|||| targets:14   GGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT083610.2	ncRNA:22   ACGUGUGGACUGUCAGGUCACU   1   *|||||||*||||||||=|||| targets:699   GGCACACCGGACAGUCCGGUGA   720 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget