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BaseInfo

ncRNA ID	novel_zma_miR12889
Species	Zea mays
Class	miRNA
Genome position	Chr2:213577472-213577551 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	59 - CGGUGGAUCACCGGACAGCUAC - 80
Stem-loop(if miRNA)	--U  AA         ---      -   CCAC    -UA    U    GC  UGUCCGGUG   CACCGG CAG    GCGC   AAAA C    ||  |||||||||   |||||| |||    ||||   ||||    CG  ACAGGCCAC   GUGGCC GUC    CGUG   UUUU C CAU  --         UAG      U   ---U    UCC    U
Stem-loop sequence	UGCAAUGUCCGGUGCACCGGCAGCCACGCGCUAAAAAUCCUUUUUCCUGUGCUCUGUCCGGUGGAUCACCGGACAGCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241490.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   **=*||||||||||||*||||| targets:23   CGGACUGUCCGGUGAUGCACCG   44 Target Full Sequence	2.5	Sequence 7485 from Patent EP2985353	NA	coding protein	psRNATarget
HI409360.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   **=*||||||||||||*||||| targets:23   CGGACUGUCCGGUGAUGCACCG   44 Target Full Sequence	2.5	Sequence 7485 from Patent EP2074227	NA	coding protein	psRNATarget
JB169821.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   **=*||||||||||||*||||| targets:23   CGGACUGUCCGGUGAUGCACCG   44 Target Full Sequence	2.5	Sequence 7485 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175244.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   ||-||*|||||||||*|||||| targets:864   GU-GCCGUCCGGUGAGCCACCG   884 Target Full Sequence	2.5	Zea mays Rop guanine nucleotide exchange factor 2 (LOC100382507), mRNA	NA	coding protein	psRNATarget
BT063211.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   ||-||*|||||||||*|||||| targets:864   GU-GCCGUCCGGUGAGCCACCG   884 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038M06 mRNA, complete cds	NA	coding protein	psRNATarget
BT064572.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   ||-||*|||||||||*|||||| targets:839   GU-GCCGUCCGGUGAGCCACCG   859 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0183P04 mRNA, complete cds	NA	coding protein	psRNATarget
EU969612.1	ncRNA:22   CAUCGACAGGCCACUAGGUGGC   1   ||-||*|||||||||*|||||| targets:885   GU-GCCGUCCGGUGAGCCACCG   905 Target Full Sequence	2.5	Zea mays clone 333178 mRNA sequence	NA	coding protein	psRNATarget